View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_low_34 (Length: 215)
Name: NF11579_low_34
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 34030320 - 34030495
Alignment:
| Q |
20 |
agtaaaaagagtataaattacaaagcaagctagaatactaccnnnnnnnnnnnnnnnnnctaagggaaacattatgcgggactataacccatgcaaacga |
119 |
Q |
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| T |
34030320 |
agtaaaaagagtataaattacaaagcaagctagaatactaccaaaacaaaacaaaaa--ctaagggaaacattatgcgggactataacccatgcaaacga |
34030417 |
T |
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| Q |
120 |
ggggattaggccatcatgagtgaaagtcgaagaaaacggtaaatttatgagtctttaaccaccatagagagtgaaaca |
197 |
Q |
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||||||||| ||| ||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
34030418 |
ggggattagaccaccataagtaaaagtcgaagaaaacattaagtttatgagtctttaaccaccatagagagtgaaaca |
34030495 |
T |
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