View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11579_low_5 (Length: 663)

Name: NF11579_low_5
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11579_low_5
NF11579_low_5
[»] chr5 (5 HSPs)
chr5 (19-663)||(41886008-41886651)
chr5 (486-663)||(41900361-41900538)
chr5 (282-357)||(32268868-32268943)
chr5 (485-663)||(32268547-32268725)
chr5 (307-354)||(41900191-41900238)
[»] scaffold1155 (1 HSPs)
scaffold1155 (554-658)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (554-658)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (554-658)||(30584-30688)
[»] chr3 (3 HSPs)
chr3 (303-347)||(51120326-51120370)
chr3 (554-659)||(51763325-51763430)
chr3 (551-588)||(1657614-1657651)
[»] chr2 (1 HSPs)
chr2 (303-347)||(45244522-45244566)
[»] chr8 (4 HSPs)
chr8 (544-593)||(17635581-17635630)
chr8 (564-593)||(17642880-17642909)
chr8 (307-347)||(17642614-17642654)
chr8 (15-59)||(34502251-34502295)
[»] chr7 (1 HSPs)
chr7 (307-344)||(10616209-10616246)
[»] chr6 (3 HSPs)
chr6 (544-593)||(9412203-9412252)
chr6 (551-588)||(11935970-11936007)
chr6 (551-588)||(11947950-11947987)
[»] chr4 (5 HSPs)
chr4 (551-588)||(645194-645231)
chr4 (307-347)||(1488824-1488864)
chr4 (307-347)||(1537251-1537291)
chr4 (527-587)||(1545952-1546012)
chr4 (307-347)||(12120920-12120960)


Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 19 - 663
Target Start/End: Original strand, 41886008 - 41886651
Alignment:
Q  19 atgatatgatccaccaaaccgcttctatctgttaaaagatgatgttactgcttccttgagaattgggatgctgatgatgatggtggcgacttttctaaaa 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  41886008 atgatatgatccaccaaactgcttctatctgttaaaagatgatgttactacttccttgggaattgggatgctgctgatgatggtggcaacttttctaaaa 41886107  T
Q  119 tgattccttnnnnnnnntgatttctcctctaaatacctgagtacttaacctctaaagtagcttcacaagttaacataagattatttgactggaagtccac 218  Q
    |||||||||        ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41886108 tgattccttaaaaaaaatgatttctcctctaaatacctgagtacttaacctctaaaatagcttcacaagttaacataagattatttgactggaagtccac 41886207  T
Q  219 tatgaaaaggaaaagaagatctttcaaaccaactatggagtccactcaagcaagaagaagcaaaagaaaaacaatggttggtggtttctatttacctgat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41886208 tatgaaaaggaaaagaagatctttcaaaccaactatggagtccactcaagcaagaagaagcaaaagaaaaacaatgattggtggtttctatttacctgat 41886307  T
Q  319 gagtgttgagaatgtgtcttcaaattcctgaaagacaaccatagttgcatgacatctttgtcagttgtctcgaaacaattcttgtccatcaccaactgca 418  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41886308 gagtgttgggaatgtgtcttcaaattcctgaaagacaaccatagttgcatgacatctttgtcagttgtctcgaaacaattcttgtccatcaccaaccgca 41886407  T
Q  419 tcagattctctctcacaatctgctatgatcaaagtcaaaccctcccttttcctcctcgtctactcagtagattcatcaatctcacctctctcgacctttc 518  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886408 tcagattctctctcacaatctgctgtgatcaaagtc-aaccctcccttttcctcctcgtctactcagtagattcatcaatctcacctctctcgacctttc 41886506  T
Q  519 tagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccaca 618  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886507 tagcttccgcggtaacctcagcaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccaca 41886606  T
Q  619 aatgggttgtgagtttttgccaaaaagattacaactttgacctct 663  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  41886607 aatgggttgcgagtttttgccaaaaagattacaactttaacctct 41886651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 486 - 663
Target Start/End: Original strand, 41900361 - 41900538
Alignment:
Q  486 tagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatca 585  Q
    |||||| | |||||||||||| ||| | || ||  |||||  |||||||||||  ||||||||  | ||||||||| |||||||||||||||||||||||    
T  41900361 tagatttaccaatctcacctccctcaatctctcgcgcttctatggtaacctcaacaaacttctttgtcaaatctctcattttccattgaaactcacatca 41900460  T
Q  586 ctcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctct 663  Q
    ||||| || ||  | ||| |  | || ||| ||  ||||||  ||| |||| ||||||||||||||||||||||||||    
T  41900461 ctcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctct 41900538  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 32268943 - 32268868
Alignment:
Q  282 aagaaaaacaatggttggtggtttctatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagacaac 357  Q
    ||||||| ||||| ||  |||||  |||||||| ||||||||||| |||||||||||||||||| |||||||||||    
T  32268943 aagaaaatcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 32268868  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 663
Target Start/End: Complemental strand, 32268725 - 32268547
Alignment:
Q  485 gtagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatc 584  Q
    ||||||||| ||| |||||||| |||||||| ||  | |||   ||||| ||||  || |||||| | |||||||||  |||||||||||||||||| ||    
T  32268725 gtagattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctctcgttttccattgaaactcacgtc 32268626  T
Q  585 actcaatctttcgtatcaacgtattattcccacaaatgggttg-tgagtttttgccaaaaagattacaactttgacctct 663  Q
    ||||||||| ||  |  || | || |||||||||| |||||||  || ||||| | || |||||||||||||||||||||    
T  32268625 actcaatctctcaaacaaatgcatcattcccacaattgggttgcagacttttt-cgaagaagattacaactttgacctct 32268547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 41900191 - 41900238
Alignment:
Q  307 tatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagac 354  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagac 41900238  T

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Target: scaffold1155 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 658
Target Start/End: Original strand, 1821 - 1925
Alignment:
Q  554 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 653  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  654 tttga 658  Q
    |||||    
T  1921 tttga 1925  T

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Target: scaffold0345 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 658
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
Q  554 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 653  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  654 tttga 658  Q
    |||||    
T  8295 tttga 8291  T

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Target: scaffold0105 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 658
Target Start/End: Original strand, 30584 - 30688
Alignment:
Q  554 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 653  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  654 tttga 658  Q
    |||||    
T  30684 tttga 30688  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 51120326 - 51120370
Alignment:
Q  303 tttctatttacctgatgagtgttgagaatgtgtcttcaaattcct 347  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  51120326 tttctatttacctgatgactgttgggaatgtgtcttcaaattcct 51120370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 659
Target Start/End: Original strand, 51763325 - 51763430
Alignment:
Q  554 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 653  Q
    ||||||||  ||| |||||||||||||||||||| ||||| ||  | || | ||   |||| |||||||||||| |||||||| |  |||||||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaac 51763424  T
Q  654 tttgac 659  Q
    ||||||    
T  51763425 tttgac 51763430  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 588
Target Start/End: Complemental strand, 1657651 - 1657614
Alignment:
Q  551 gccaaatctctaattttccattgaaactcacatcactc 588  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  1657651 gccaaatctctagttttccattgagactcacatcactc 1657614  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 45244522 - 45244566
Alignment:
Q  303 tttctatttacctgatgagtgttgagaatgtgtcttcaaattcct 347  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||    
T  45244522 tttctatttacctgatgagtgttgggaatgtgtcttgaaattcct 45244566  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 593
Target Start/End: Original strand, 17635581 - 17635630
Alignment:
Q  544 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 593  Q
    |||||| || ||||||||  ||||||||||||||||| ||||||||||||    
T  17635581 cttctctgcgaaatctctccttttccattgaaactcatatcactcaatct 17635630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 593
Target Start/End: Original strand, 17642880 - 17642909
Alignment:
Q  564 ttttccattgaaactcacatcactcaatct 593  Q
    ||||||||||||||||||||||||||||||    
T  17642880 ttttccattgaaactcacatcactcaatct 17642909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 17642614 - 17642654
Alignment:
Q  307 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 347  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcct 17642654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 34502295 - 34502251
Alignment:
Q  15 atcaatgatatgatccaccaaaccgcttctatctgttaaaagatg 59  Q
    |||| |||||||| ||||||| |||||||||||||| ||||||||    
T  34502295 atcactgatatgacccaccaagccgcttctatctgtcaaaagatg 34502251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  307 tatttacctgatgagtgttgagaatgtgtcttcaaatt 344  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 593
Target Start/End: Complemental strand, 9412252 - 9412203
Alignment:
Q  544 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 593  Q
    |||||||| |||||||||  |||||||||||||||| ||||||| |||||    
T  9412252 cttctcggtcaaatctctcgttttccattgaaactctcatcacttaatct 9412203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 588
Target Start/End: Original strand, 11935970 - 11936007
Alignment:
Q  551 gccaaatctctaattttccattgaaactcacatcactc 588  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11935970 gccaaatctctagttttccattgagactcacatcactc 11936007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 588
Target Start/End: Original strand, 11947950 - 11947987
Alignment:
Q  551 gccaaatctctaattttccattgaaactcacatcactc 588  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11947950 gccaaatctctagttttccattgagactcacatcactc 11947987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 588
Target Start/End: Complemental strand, 645231 - 645194
Alignment:
Q  551 gccaaatctctaattttccattgaaactcacatcactc 588  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  645231 gccaaatctctagttttccattgagactcacatcactc 645194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 1488824 - 1488864
Alignment:
Q  307 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 347  Q
    ||||||||||||||||| || ||||||||| ||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcct 1488864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 1537251 - 1537291
Alignment:
Q  307 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 347  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  1537251 tatttacctgatgagtgttgggaatgtgtattcagattcct 1537291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 587
Target Start/End: Complemental strand, 1546012 - 1545952
Alignment:
Q  527 gtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcact 587  Q
    ||||| ||||||  || ||||||  ||||||||||| ||||||||||||||||||| ||||    
T  1546012 gtggtgacctcaacaagcttctctaccaaatctctacttttccattgaaactcacaacact 1545952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 12120920 - 12120960
Alignment:
Q  307 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 347  Q
    |||||||||||||||||||| ||||||||| ||| ||||||    
T  12120920 tatttacctgatgagtgttgggaatgtgtcatcagattcct 12120960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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