View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_low_8 (Length: 474)
Name: NF11579_low_8
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 15 - 464
Target Start/End: Complemental strand, 30874238 - 30873789
Alignment:
| Q |
15 |
aacaacaacaataaccatgaagggcttgacctagtttcaccaaatcatggtcttggagatgtagttggtcgcaggccgaggggaagacctccgggctcaa |
114 |
Q |
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| T |
30874238 |
aacaacaacaataaccatgaagggcttgacctagtttcaccaaatcatggtcttggagatgtagttggtcgcaggccgaggggaagacctccgggctcaa |
30874139 |
T |
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| Q |
115 |
agaacaaacctaaaccaccggtgatcatcacaagagagagtgcaaacacacttagggctcacatccttgaagtaagtagtggttgtgatgtgtttgactc |
214 |
Q |
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| T |
30874138 |
agaacaaacctaaaccaccggtgatcatcacaagagagagtgcaaacacacttagggctcacatccttgaagtaagtagtggttgtgatgtgtttgactc |
30874039 |
T |
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| Q |
215 |
tgtggctacctatgcaagaaagcgtcaaagagggatctgtgtccttagtgggagtggaacagtcactaacgtgaccctgcgacagccagctgccgcagga |
314 |
Q |
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| T |
30874038 |
tgtggctacttatgcaagaaagcgtcaaagagggatctgtgtccttagtgggagtggaacagtcactaacgtgaccttgcgacagccagctgccgcagga |
30873939 |
T |
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| Q |
315 |
tctgtagtgactttacacggaaggtttgaaatactttctttgtccggatcgtttctaccaccaccagctcctccaggagctacaagtttgagtgtgttcc |
414 |
Q |
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| T |
30873938 |
tctgtagtgactttacatggaaggtttgaaatactttctttgtccggatcgtttctaccaccaccagctcctccaggagctacaagtttgagtgtgttcc |
30873839 |
T |
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| Q |
415 |
ttggcggaggccaaggtcaagttgtgggaggaaatgttgttggtcctttg |
464 |
Q |
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| T |
30873838 |
ttggtggaggccaaggtcaagttgtgggaggaaatgttgttggtcctttg |
30873789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 40541519 - 40541580
Alignment:
| Q |
126 |
aaaccaccggtgatcatcacaagagagagtgcaaacacacttagggctcacatccttgaagt |
187 |
Q |
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| T |
40541519 |
aaaccaccggtgatcatcactcgagagagtgccaacactctcagagctcatattcttgaagt |
40541580 |
T |
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