View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_low_9 (Length: 472)
Name: NF11579_low_9
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 75 - 325
Target Start/End: Complemental strand, 12889529 - 12889279
Alignment:
| Q |
75 |
tctaaaagaatcttccgtaataaaaggtggcatagcatcccacaaggtaatccaatctataatatggtcattgtttgctaatttatccgcacattcatta |
174 |
Q |
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| T |
12889529 |
tctaaaagaatcttccataataaaaggtggcatagcatcccacaagataattcaatctataacatggtcatggtttgctaatttatccgcacatccatta |
12889430 |
T |
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| Q |
175 |
ccttccccgtatatatgttacaagataacctgaacgcatatatgacttatacgtaagaagagcgtagtatataaataactcgcggtgacaatcatgattt |
274 |
Q |
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| T |
12889429 |
ccttccctgtatacatgtgaagagataacctgaacacatgtatgacttgcacgtaagaagaccgtagtacataaataacttgcggtgaaaatcatcattt |
12889330 |
T |
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| Q |
275 |
atagattttgtggacaatagttttcaacaattatacaataattgaacctta |
325 |
Q |
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| T |
12889329 |
atagattttatggacaatattttttaacaattattcaataattgaacctta |
12889279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 314 - 468
Target Start/End: Complemental strand, 12887814 - 12887658
Alignment:
| Q |
314 |
aattgaaccttattgttataaaaaaga--agaagtaattgaacaattaagaaaagaagaagttccaacacaaaatacaactttaataagttgaaagaatc |
411 |
Q |
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| T |
12887814 |
aattaaaccttattgttataaaaaaaacaagaaataattgaacgattaagaaaagaagaagttccaacacaaaagacaactttaataagttgaaagaatc |
12887715 |
T |
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| Q |
412 |
tctatgttttccattttaggtagaatataagccaataacactttatctctgcttctc |
468 |
Q |
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| T |
12887714 |
tctatgttttccattttaggtagaatattagccaataagactttatctttgtttctc |
12887658 |
T |
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