View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1157_high_4 (Length: 451)
Name: NF1157_high_4
Description: NF1157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1157_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 73 - 422
Target Start/End: Original strand, 35938700 - 35939049
Alignment:
| Q |
73 |
aattttatagagatgattttgaaccaaaaacaaccttaaatcatccctcttccaatgatgaaaagaatgtagcggttaggttttttgttgggtactgaaa |
172 |
Q |
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| T |
35938700 |
aattttatagagatgattttgaaccaaaaacaaccttaaatcatccctcttccaatgatgaaaagaatgcagcggttagattttttgttgggtactgaaa |
35938799 |
T |
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| Q |
173 |
catctttttgttgggtactgaaacatctaaacatcatatagttattccnnnnnnnatattaactttctttgtttaaatgacatgacatacacatttctct |
272 |
Q |
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| T |
35938800 |
catctttttgttgggtactgaaacatctaaacatcatatagttattcctttttttatattaactttctttgtttaaatgacattacatacacatttctct |
35938899 |
T |
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| Q |
273 |
tctatttttccccttaggcatctacgatggtaggtatttatccttataagcgaaagtgctaaatagacattctcattgttgcataagaaatatgagtatt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35938900 |
tctatttttccccttaggcatctacgatggtaggtatttatccttataagcgaaagtgctaaatagacattctcattgttgcataagaaatatgagtatt |
35938999 |
T |
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| Q |
373 |
tatagagattttttgaaaaaggagtatttatagagatgtgtacttttata |
422 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35939000 |
tatagagattttttgaaaaaagagtatttatagagatgtgtacttttata |
35939049 |
T |
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