View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1157_low_13 (Length: 330)
Name: NF1157_low_13
Description: NF1157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1157_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 36 - 243
Target Start/End: Complemental strand, 54243884 - 54243677
Alignment:
| Q |
36 |
ccatgaaatggaaaagataaaaagggaggaggaagacaatgggagaggaagagcgtgagattaaaatgcgtcatattgtttgattttgactcggatatcc |
135 |
Q |
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| T |
54243884 |
ccatgaaatggaaaagataaaaagggaggaggaagacaatgggagaggaagagcgtgagattaaaatgcgtcatattgtttgattttgactcggatatcc |
54243785 |
T |
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| Q |
136 |
tctgcgcgtaactacataaattaattacctcaagtaggataggtcctcaataggcggcaaagttttttctcaagatatttgacattgttgcattccccca |
235 |
Q |
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| T |
54243784 |
tctgcacgtaactacataaattaattacctcaagcaggataagtcctcaataggtggcaaagtttttgctgaagatatttgacattgttgcattccccca |
54243685 |
T |
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| Q |
236 |
acaagacc |
243 |
Q |
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| T |
54243684 |
acaagacc |
54243677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 54243632 - 54243559
Alignment:
| Q |
252 |
ttctagattcgattgattccaactacaacatgttcttgttgttctaatttattattttgttgatattattcgac |
325 |
Q |
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| T |
54243632 |
ttctagattcgattgattccaactacaacatgttcttgttgttctaatttatgattttgttgatgttgttcgac |
54243559 |
T |
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