View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1157_low_17 (Length: 276)

Name: NF1157_low_17
Description: NF1157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1157_low_17
NF1157_low_17
[»] chr4 (35 HSPs)
chr4 (1-276)||(27570148-27570423)
chr4 (1-276)||(27420171-27420449)
chr4 (3-276)||(27425579-27425851)
chr4 (2-276)||(27566051-27566324)
chr4 (22-276)||(27412439-27412690)
chr4 (29-272)||(27415394-27415637)
chr4 (4-254)||(27423010-27423260)
chr4 (21-237)||(27563465-27563689)
chr4 (26-150)||(27444918-27445033)
chr4 (226-276)||(27516917-27516967)
chr4 (26-78)||(27554273-27554325)
chr4 (26-146)||(27557394-27557505)
chr4 (3-58)||(27506682-27506737)
chr4 (226-276)||(27466596-27466646)
chr4 (6-83)||(27526216-27526293)
chr4 (3-83)||(27469419-27469499)
chr4 (3-83)||(27486942-27487022)
chr4 (3-83)||(27513877-27513957)
chr4 (226-276)||(27473669-27473719)
chr4 (215-276)||(27557267-27557329)
chr4 (104-149)||(27498326-27498371)
chr4 (26-78)||(27498379-27498431)
chr4 (39-86)||(27585644-27585691)
chr4 (227-276)||(27431468-27431518)
chr4 (30-63)||(27431276-27431309)
chr4 (235-276)||(27445116-27445157)
chr4 (6-83)||(27476646-27476723)
chr4 (13-58)||(27478994-27479039)
chr4 (13-58)||(27486054-27486099)
chr4 (3-76)||(27497423-27497496)
chr4 (104-149)||(27501228-27501273)
chr4 (26-83)||(27501276-27501333)
chr4 (104-149)||(27516793-27516838)
chr4 (6-83)||(27523507-27523584)
chr4 (3-63)||(17970278-17970338)
[»] chr3 (6 HSPs)
chr3 (26-76)||(38024999-38025049)
chr3 (26-76)||(38031451-38031501)
chr3 (27-76)||(50911994-50912043)
chr3 (3-76)||(55084752-55084825)
chr3 (26-63)||(50909939-50909976)
chr3 (27-63)||(50904917-50904953)
[»] chr5 (1 HSPs)
chr5 (3-64)||(1756858-1756919)
[»] chr8 (1 HSPs)
chr8 (26-76)||(21607420-21607470)
[»] chr2 (1 HSPs)
chr2 (3-63)||(3073548-3073608)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 27570148 - 27570423
Alignment:
Q  1 cggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccaggaaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27570148 cggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccagaaaaaga 27570247  T
Q  101 ttcccttctgatgataccagggaaacgaaaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataaaaacttttaagcaataaccaa 200  Q
    | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570248 tgcccttctgatgataccagggggacgaaaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataaaaacttttaagcaataaccaa 27570347  T
Q  201 gtttttcagatttgaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570348 gtttttcagatttgaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatata 27570423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 27420449 - 27420171
Alignment:
Q  1 cggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccaggaaaaga 100  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||| ||    
T  27420449 cggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctgatcggtttgcagaaaatga 27420350  T
Q  101 ttcccttctgatgataccagggaaacgaaaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataa---aaacttttaagcaataac 197  Q
    | || |||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||  ||||||   ||||||||||||||  ||    
T  27420349 tgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggtttaaaaataaaataaacttttaagcaaagac 27420250  T
Q  198 caagtttttcagatttgaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    ||||||||| | || |||||||||||||||||||||| ||||||||||| ||||||||||| || | ||||||||||||    
T  27420249 caagtttttgaaatctgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccttgaatatatata 27420171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 27425851 - 27425579
Alignment:
Q  3 gggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccaggaaaagatt 102  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||     
T  27425851 gggatcacataccgcttttgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgatcggtttgcagaaaatgatg 27425752  T
Q  103 cccttctgatgataccagggaaacgaaaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataaaaacttttaagcaataaccaagt 202  Q
    || |||||||||||||||  ||||||||||||||| ||||||||||||| |||||||||| | |   ||||||| ||| || | ||||||| || |||||    
T  27425751 cctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaat-attcagttttaaaaaaagacctgtaagcaagaagcaagt 27425653  T
Q  203 ttttcagatttgaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    |||| | ||| ||||| ||||||||||||||||||||||||||| ||||||||||| || | | ||||||||||    
T  27425652 ttttgaaattggaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatata 27425579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 276
Target Start/End: Original strand, 27566051 - 27566324
Alignment:
Q  2 ggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccaggaaaagat 101  Q
    |||||||||| | ||| | ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||| ||||||||||  ||| |||    
T  27566051 ggggatcacaaatcgcttttgtttctctccaacatacactgcaagatatccctttggcacgtccacaacttttgaaactgctcggtttccaacaaatgat 27566150  T
Q  102 tcccttctgatgataccagggaaacgaaaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataaaaacttttaagcaataaccaag 201  Q
     ||||| |||| |||| |||||||||||||||||||  |||||| ||| | ||||||||| || |||||||  || ||| |||| ||||||| || ||||    
T  27566151 gcccttttgataatactagggaaacgaaaacccattgctgtatgcgttcaaacttgagaaaaattggtttt--aaaaaagacttgtaagcaagaagcaag 27566248  T
Q  202 ttttt-cagatttgaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    |||||  | ||| ||||| ||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||    
T  27566249 tttttggaaattggaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtaaccatgaatatatata 27566324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 27412690 - 27412439
Alignment:
Q  22 gtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccaggaaaagattcccttctgatgataccagg 121  Q
    |||||||||||||||| || |||| ||||||||||||||  || |||||||||||| ||| ||||||| ||| ||| ||| ||||||||||||||||||     
T  27412690 gtttctctccaacatacacggcaatatatccctttggcatgtcaacagcttttgaaactgctcggtttgcagaaaatgatgcccttctgatgataccaga 27412591  T
Q  122 gaaacgaaaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataaaaacttttaagcaataaccaagtttttcagatttgaatgctt 221  Q
    |||||||||||||||||||||||||||||  |||| |    |||||||| |   |  || |||| ||||||| || ||||||||| | |||  |||| ||    
T  27412590 gaaacgaaaacccatttttgtatgtgttagaacttaaattcaaatggttgt---aggaagacttgtaagcaagaagcaagtttttgaaattaaaatggtt 27412494  T
Q  222 taggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    |||||||||||||||||||||| || |||||||||||||| ||||||||||||||    
T  27412493 taggatgtgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatata 27412439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 272
Target Start/End: Complemental strand, 27415637 - 27415394
Alignment:
Q  29 tccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccaggaaaagattcccttctgatgataccagggaaacga 128  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||  |  |||| || ||| ||| |||  | |||||||||||| ||||| ||||    
T  27415637 tccaacatacactgcaagatatccctttggcacatccacaacttttgaaattactcggcttgcagaaaatgatgactttctgatgatactagggacacga 27415538  T
Q  129 aaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataa-aaacttttaagcaataaccaagtttttcagatttgaatgctttaggat 227  Q
    ||||||||| ||||||||||||| ||||||||| |||| ||||| |||||| | |  ||  |||||||| ||||||||| | |  |||||||||||||||    
T  27415537 aaacccattgttgtatgtgttaaaacttgagaagaaattgttttaaaataagataaattgtagcaataa-caagtttttgaaaactgaatgctttaggat 27415439  T
Q  228 gtgaatgatttgtgttggttctaaatgcttgcagtcatgaatata 272  Q
    ||||||| ||||||||||| ||||||||||| || | ||||||||    
T  27415438 gtgaatgttttgtgttggtcctaaatgcttgtagccttgaatata 27415394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 27423260 - 27423010
Alignment:
Q  4 ggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccaggaaaagattc 103  Q
    ||||||||| ||| |||||||||| |||||||||||| |||||||||| ||||||||  ||| ||||||||||   || ||||||| ||| ||| ||  |    
T  27423260 ggatcacatgccgtgtctgtttctatccaacatatacagcaagatatctctttggcatgtccgcagcttttgatattgctcggtttgcagaaaatgaggc 27423161  T
Q  104 ccttctgatgataccagggaaacgaaaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataaaaacttttaagcaataaccaagtt 203  Q
    ||||||||| ||||||| |||||| | ||||||| ||||||||||||| |  | |||| || |||||||  |  ||||| ||  |||||||| |||||||    
T  27423160 ccttctgataataccagagaaacggatacccattgttgtatgtgttaaaaagttagaagaagtggtttt--agaaaaaaattaaaagcaatagccaagtt 27423063  T
Q  204 tttcagatt-tgaatg-ctttaggatgtgaatgatttgtgttggttctaaatg 254  Q
    ||||| |||   ||||  |||||||||||||||||| | ||||||||||||||    
T  27423062 tttcaaattgcaaatgtttttaggatgtgaatgattagagttggttctaaatg 27423010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 27563465 - 27563689
Alignment:
Q  21 tgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccaggaaaagattc---ccttctgatgatac 117  Q
    ||||| |||||||| || ||||||||||| ||||||||||| |||||| |||||| | |||||||| ||  || ||| |||     |||||| |||||||    
T  27563465 tgtttatctccaacgtacactgcaagatagccctttggcacgtccacaacttttgtaactgatcggcttgaagtaaacgatgatgaccttctaatgatac 27563564  T
Q  118 cagggaaacgaaaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataaa---------aacttttaagcaataaccaagtttttca 208  Q
    |||| |||||||||||||||  ||  |||||||| ||||||||| ||    |||||||| |||         |||||||||||||||||||||||||| |    
T  27563565 caggtaaacgaaaacccattgctgagtgtgttaaaacttgagaagaa----tttttaaaaaaagaacaaaaaaacttttaagcaataaccaagtttttga 27563660  T
Q  209 gatttgaatgctttaggatgtgaatgatt 237  Q
     ||||||||||||||||||||||||||||    
T  27563661 aatttgaatgctttaggatgtgaatgatt 27563689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 27444918 - 27445033
Alignment:
Q  26 ctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccaggaaaagattcccttctgatgataccagggaaa 125  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||||||| || | ||||| |||         |||||||||||||||| |  |||    
T  27444918 ctctccaacgtatactgcaagatatccctttggcacatccacgccttttgaagatgtttggtttgcag---------cccttctgatgataccggttaaa 27445008  T
Q  126 cgaaaacccatttttgtatgtgtta 150  Q
    |||||||||||| ||||||||||||    
T  27445009 cgaaaacccattcttgtatgtgtta 27445033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 27516917 - 27516967
Alignment:
Q  226 atgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  27516917 atgtgaatgatttgtgttggtgctaaatgcttgcagccatgaatatatata 27516967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 27554325 - 27554273
Alignment:
Q  26 ctctccaacatatactgcaagatatccctttggcacatccacagcttttgaag 78  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  27554325 ctctccaacatatactgcaaggtatccctttggcacatccactccttttgaag 27554273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 27557505 - 27557394
Alignment:
Q  26 ctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgatcggtttccaggaaaagattcccttctgatgataccagggaaa 125  Q
    ||||||||||||||| |||||||||||| |||||||||||||| | ||||||| || | |||||         ||| |||||||||||||| |||| |||    
T  27557505 ctctccaacatatacggcaagatatccccttggcacatccacaccctttgaagatgcttggttt---------gatgcccttctgatgataacaggtaaa 27557415  T
Q  126 cgaaaacccatttttgtatgt 146  Q
    |||||||||||| || |||||    
T  27557414 cgaaaacccattcttatatgt 27557394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 27506737 - 27506682
Alignment:
Q  3 gggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 58  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  27506737 gggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttgg 27506682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 27466646 - 27466596
Alignment:
Q  226 atgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  27466646 atgtgaatgatttgtgttggtgctaaaggcttgcagccatgaatatatata 27466596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 27526216 - 27526293
Alignment:
Q  6 atcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgat 83  Q
    |||||| ||||| ||  ||||||||||||||| ||||| |||||||||||||| ||||| ||| ||||||||| ||||    
T  27526216 atcacaaaccgcttcattttctctccaacatacactgctagatatccctttggaacatcgacaccttttgaagatgat 27526293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 27469499 - 27469419
Alignment:
Q  3 gggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgat 83  Q
    ||||||||| ||||| ||  ||||||||| || || ||||| |||||||||||||| || |||||||||||||||| ||||    
T  27469499 gggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttggaacgtccacagcttttgaagatgat 27469419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 27487022 - 27486942
Alignment:
Q  3 gggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgat 83  Q
    ||||||||| ||||| ||  ||||||||| || || ||||| |||||||||||||| || |||||||||||||||| ||||    
T  27487022 gggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttggaacgtccacagcttttgaagatgat 27486942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 27513877 - 27513957
Alignment:
Q  3 gggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgat 83  Q
    ||||||||| ||||| ||  ||||||||| ||||| ||||| |||||||| |||||||| || ||||||||||||| ||||    
T  27513877 gggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttggcacgtcaacagcttttgaagatgat 27513957  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 27473719 - 27473669
Alignment:
Q  226 atgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    ||||||||||||||||||| | ||||| |||||||| ||||||||||||||    
T  27473719 atgtgaatgatttgtgttgatgctaaaggcttgcagccatgaatatatata 27473669  T

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Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 27557329 - 27557267
Alignment:
Q  215 aatgctttaggatgtgaatgattt-gtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||||   |||||||||||||    
T  27557329 aatgctttaggttgtgaatgattttgtgttggtcctaaatgcttgcaactatgaatatatata 27557267  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 27498371 - 27498326
Alignment:
Q  104 ccttctgatgataccagggaaacgaaaacccatttttgtatgtgtt 149  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||    
T  27498371 ccttctgatgatacctggtaaacgaaaacccattttcgtatgtgtt 27498326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 27498431 - 27498379
Alignment:
Q  26 ctctccaacatatactgcaagatatccctttggcacatccacagcttttgaag 78  Q
    |||||||||||||||||| ||||||||||||||||  |||||  |||||||||    
T  27498431 ctctccaacatatactgctagatatccctttggcatgtccacgccttttgaag 27498379  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 27585691 - 27585644
Alignment:
Q  39 actgcaagatatccctttggcacatccacagcttttgaagctgatcgg 86  Q
    ||||| ||||||||||||||||| |||||| |||||||| ||||||||    
T  27585691 actgcgagatatccctttggcacgtccacaacttttgaaactgatcgg 27585644  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 27431468 - 27431518
Alignment:
Q  227 tgtgaatgat-ttgtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    |||||||||| ||||||||||| |||| |||||||| ||||||||||||||    
T  27431468 tgtgaatgatattgtgttggttataaaagcttgcagccatgaatatatata 27431518  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 27431276 - 27431309
Alignment:
Q  30 ccaacatatactgcaagatatccctttggcacat 63  Q
    |||||||||||||||| |||||||||||||||||    
T  27431276 ccaacatatactgcaatatatccctttggcacat 27431309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 27445116 - 27445157
Alignment:
Q  235 atttgtgttggttctaaatgcttgcagtcatgaatatatata 276  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||    
T  27445116 atttgagttggttcttaatgcttgcagtcattaatatatata 27445157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 27476723 - 27476646
Alignment:
Q  6 atcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgat 83  Q
    |||||| ||||| ||  |||||| |||||||| ||||| |||||||||||||| || ||||| | |||||||| ||||    
T  27476723 atcacaaaccgcttcattttctcaccaacatacactgctagatatccctttggaacgtccacggtttttgaagatgat 27476646  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 27478994 - 27479039
Alignment:
Q  13 accgcgtctgtttctctccaacatatactgcaagatatccctttgg 58  Q
    ||||| ||||||||||||||||||| ||||||| ||| ||||||||    
T  27478994 accgcttctgtttctctccaacatacactgcaacatagccctttgg 27479039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 27486054 - 27486099
Alignment:
Q  13 accgcgtctgtttctctccaacatatactgcaagatatccctttgg 58  Q
    ||||| ||||||||||||||||||| ||||||| ||| ||||||||    
T  27486054 accgcttctgtttctctccaacatacactgcaacatagccctttgg 27486099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 27497423 - 27497496
Alignment:
Q  3 gggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttga 76  Q
    ||||||||| ||||| | ||||| ||||||||||| ||||||| ||| |||||||| || || |||| ||||||    
T  27497423 gggatcacaaaccgcttttgtttatctccaacatacactgcaacatagccctttggaacttctacagattttga 27497496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 27501273 - 27501228
Alignment:
Q  104 ccttctgatgataccagggaaacgaaaacccatttttgtatgtgtt 149  Q
    |||||| | ||||||||| ||||||||||||||| |||||||||||    
T  27501273 ccttcttaggataccaggtaaacgaaaacccattcttgtatgtgtt 27501228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 27501333 - 27501276
Alignment:
Q  26 ctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgat 83  Q
    |||||||||||||||||| ||| |||||||||| || || ||| ||||||||| ||||    
T  27501333 ctctccaacatatactgctagacatccctttggaacctcgacaccttttgaagatgat 27501276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 27516793 - 27516838
Alignment:
Q  104 ccttctgatgataccagggaaacgaaaacccatttttgtatgtgtt 149  Q
    |||| ||||||||| ||| ||||||||||||||| |||||||||||    
T  27516793 ccttttgatgatactaggtaaacgaaaacccattgttgtatgtgtt 27516838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 27523507 - 27523584
Alignment:
Q  6 atcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttgaagctgat 83  Q
    |||||| ||||| ||  ||||||||| || || ||||| ||||| |||||||| || |||||||||||||||| ||||    
T  27523507 atcacaaaccgcttcattttctctcctacgtacactgctagatagccctttggaacgtccacagcttttgaagatgat 27523584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 17970338 - 17970278
Alignment:
Q  3 gggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacat 63  Q
    ||||||||| ||||| ||  || ||||||||| || || ||||||||||||||||||||||    
T  17970338 gggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacat 17970278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 38024999 - 38025049
Alignment:
Q  26 ctctccaacatatactgcaagatatccctttggcacatccacagcttttga 76  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  38024999 ctctccaacatatactgcaagatagccctttggtacattcacagcttttga 38025049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 38031451 - 38031501
Alignment:
Q  26 ctctccaacatatactgcaagatatccctttggcacatccacagcttttga 76  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  38031451 ctctccaacatatactgcaagatagccctttggtacattcacagcttttga 38031501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 50911994 - 50912043
Alignment:
Q  27 tctccaacatatactgcaagatatccctttggcacatccacagcttttga 76  Q
    |||||||||||||| |||||||| ||||||||||||| |||| |||||||    
T  50911994 tctccaacatataccgcaagatagccctttggcacattcacaacttttga 50912043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 55084825 - 55084752
Alignment:
Q  3 gggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttga 76  Q
    ||||||||| ||||| ||  ||||||||||||||| ||||||||| | || |||||||||| ||||| ||||||    
T  55084825 gggatcacaaaccgcttcattttctctccaacatacactgcaagacacccttttggcacattcacagattttga 55084752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 50909976 - 50909939
Alignment:
Q  26 ctctccaacatatactgcaagatatccctttggcacat 63  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  50909976 ctctccaacatacactgcaagataaccctttggcacat 50909939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 50904917 - 50904953
Alignment:
Q  27 tctccaacatatactgcaagatatccctttggcacat 63  Q
    |||||||| || |||||||||||||||||||||||||    
T  50904917 tctccaacgtacactgcaagatatccctttggcacat 50904953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 1756858 - 1756919
Alignment:
Q  3 gggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatc 64  Q
    ||||||||| ||||| ||||||||||||||||||  ||||||||||| |||||||| |||||    
T  1756858 gggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttggtacatc 1756919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 21607420 - 21607470
Alignment:
Q  26 ctctccaacatatactgcaagatatccctttggcacatccacagcttttga 76  Q
    ||||||||||||||| ||||||||||||||||| |||| |||| |||||||    
T  21607420 ctctccaacatataccgcaagatatccctttggtacattcacaacttttga 21607470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 3073608 - 3073548
Alignment:
Q  3 gggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacat 63  Q
    ||||||||| ||||| ||  || ||||||||| || || ||||||||||||||||||||||    
T  3073608 gggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacat 3073548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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