View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1157_low_18 (Length: 260)

Name: NF1157_low_18
Description: NF1157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1157_low_18
NF1157_low_18
[»] scaffold0026 (2 HSPs)
scaffold0026 (5-174)||(11840-12007)
scaffold0026 (2-164)||(111582-111741)
[»] chr7 (24 HSPs)
chr7 (1-168)||(18873255-18873420)
chr7 (1-163)||(15168070-15168230)
chr7 (2-167)||(14422880-14423043)
chr7 (1-159)||(10895795-10895951)
chr7 (1-174)||(12709833-12710004)
chr7 (1-174)||(13122904-13123075)
chr7 (20-174)||(13743623-13743774)
chr7 (2-163)||(16009473-16009631)
chr7 (48-174)||(12590633-12590756)
chr7 (48-174)||(13007374-13007497)
chr7 (22-161)||(16677209-16677348)
chr7 (22-161)||(17651445-17651584)
chr7 (108-174)||(21230949-21231015)
chr7 (108-163)||(11382871-11382926)
chr7 (108-163)||(11389348-11389403)
chr7 (108-174)||(20311039-20311107)
chr7 (100-163)||(13679485-13679548)
chr7 (109-164)||(2971254-2971309)
chr7 (109-164)||(20906461-20906516)
chr7 (109-163)||(11311059-11311113)
chr7 (128-169)||(831628-831669)
chr7 (128-169)||(1196808-1196849)
chr7 (128-169)||(34958578-34958619)
chr7 (107-163)||(46625961-46626017)
[»] chr5 (12 HSPs)
chr5 (1-168)||(22751036-22751201)
chr5 (2-175)||(38144525-38144695)
chr5 (2-163)||(19512282-19512441)
chr5 (2-163)||(28370055-28370213)
chr5 (48-168)||(23528573-23528690)
chr5 (99-163)||(18407944-18408008)
chr5 (108-174)||(22438736-22438803)
chr5 (99-163)||(23111200-23111264)
chr5 (109-164)||(19236900-19236955)
chr5 (108-175)||(42961566-42961633)
chr5 (111-164)||(22461158-22461211)
chr5 (111-164)||(22467782-22467835)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-174)||(111776-111948)
[»] chr3 (18 HSPs)
chr3 (1-163)||(14762758-14762918)
chr3 (1-161)||(38310802-38310960)
chr3 (1-161)||(20247791-20247949)
chr3 (1-161)||(24192850-24193009)
chr3 (2-163)||(9534224-9534382)
chr3 (2-164)||(23370505-23370665)
chr3 (80-174)||(41455087-41455178)
chr3 (22-174)||(16801457-16801606)
chr3 (48-164)||(24933828-24933941)
chr3 (102-163)||(18929239-18929300)
chr3 (99-163)||(17240513-17240577)
chr3 (20-80)||(55499185-55499244)
chr3 (109-164)||(13302240-13302295)
chr3 (109-164)||(13323787-13323842)
chr3 (109-164)||(12033444-12033499)
chr3 (109-164)||(13312896-13312951)
chr3 (109-164)||(17131732-17131787)
chr3 (109-164)||(51301589-51301644)
[»] scaffold0924 (1 HSPs)
scaffold0924 (1-174)||(740-912)
[»] chr6 (23 HSPs)
chr6 (1-163)||(23057833-23057993)
chr6 (12-174)||(29614136-29614297)
chr6 (1-174)||(10986170-10986341)
chr6 (1-174)||(18800332-18800503)
chr6 (1-163)||(23839093-23839253)
chr6 (29-174)||(930085-930227)
chr6 (2-163)||(4477753-4477912)
chr6 (48-174)||(12168305-12168428)
chr6 (48-174)||(19287214-19287337)
chr6 (48-174)||(19785859-19785982)
chr6 (48-174)||(19878398-19878521)
chr6 (48-174)||(19884174-19884297)
chr6 (79-164)||(34639986-34640069)
chr6 (99-164)||(34646660-34646725)
chr6 (48-164)||(25469704-25469816)
chr6 (20-161)||(21565214-21565353)
chr6 (108-174)||(24512833-24512899)
chr6 (107-163)||(25397172-25397228)
chr6 (111-163)||(9187498-9187550)
chr6 (107-163)||(19471335-19471391)
chr6 (107-163)||(25348486-25348542)
chr6 (107-161)||(25598643-25598697)
chr6 (99-164)||(31252413-31252478)
[»] scaffold1773 (1 HSPs)
scaffold1773 (1-171)||(1073-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-171)||(50074-50241)
[»] chr4 (11 HSPs)
chr4 (1-174)||(8045822-8045992)
chr4 (1-174)||(11848002-11848179)
chr4 (48-164)||(53483646-53483760)
chr4 (108-174)||(15408139-15408205)
chr4 (107-163)||(8834895-8834951)
chr4 (107-163)||(13888641-13888697)
chr4 (109-161)||(14486661-14486713)
chr4 (107-163)||(15245215-15245271)
chr4 (107-158)||(22724691-22724742)
chr4 (128-169)||(15747551-15747592)
chr4 (107-163)||(15308120-15308176)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-161)||(14398-14557)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-174)||(11236-11407)
[»] scaffold0058 (1 HSPs)
scaffold0058 (20-174)||(206-356)
[»] chr8 (14 HSPs)
chr8 (1-174)||(23866509-23866680)
chr8 (2-164)||(44477519-44477678)
chr8 (2-164)||(44492677-44492836)
chr8 (1-161)||(8727735-8727893)
chr8 (48-174)||(17054533-17054656)
chr8 (99-163)||(23482053-23482117)
chr8 (107-163)||(18614271-18614327)
chr8 (108-174)||(14056553-14056619)
chr8 (1-175)||(27940840-27941014)
chr8 (107-163)||(39364919-39364975)
chr8 (108-174)||(25111976-25112042)
chr8 (109-163)||(29643386-29643440)
chr8 (109-164)||(24320670-24320725)
chr8 (107-163)||(21931696-21931752)
[»] chr1 (12 HSPs)
chr1 (1-163)||(20437024-20437184)
chr1 (48-174)||(41111977-41112100)
chr1 (99-163)||(32651563-32651627)
chr1 (108-163)||(19663517-19663572)
chr1 (99-163)||(18712790-18712854)
chr1 (107-163)||(20805320-20805376)
chr1 (108-163)||(11158093-11158148)
chr1 (107-161)||(10811785-10811839)
chr1 (109-164)||(20851132-20851187)
chr1 (109-164)||(20857759-20857814)
chr1 (109-164)||(21706276-21706331)
chr1 (109-164)||(21710818-21710873)
[»] chr2 (15 HSPs)
chr2 (2-163)||(19661454-19661612)
chr2 (2-163)||(6483614-6483772)
chr2 (2-163)||(6487081-6487239)
chr2 (22-174)||(26583744-26583892)
chr2 (48-164)||(5706023-5706137)
chr2 (20-163)||(23101463-23101604)
chr2 (99-163)||(23265133-23265197)
chr2 (99-163)||(23280201-23280265)
chr2 (20-161)||(23089057-23089196)
chr2 (20-161)||(23878922-23879060)
chr2 (102-163)||(21908353-21908414)
chr2 (107-163)||(24661576-24661632)
chr2 (109-164)||(10577-10632)
chr2 (109-164)||(25180929-25180984)
chr2 (58-173)||(26885133-26885246)
[»] scaffold0090 (1 HSPs)
scaffold0090 (19-175)||(18082-18236)
[»] scaffold0553 (1 HSPs)
scaffold0553 (2-164)||(10195-10355)
[»] scaffold0544 (1 HSPs)
scaffold0544 (2-164)||(1525-1685)
[»] scaffold0117 (2 HSPs)
scaffold0117 (1-174)||(1887-2057)
scaffold0117 (1-174)||(8564-8734)
[»] scaffold0154 (1 HSPs)
scaffold0154 (22-174)||(30772-30923)
[»] scaffold0796 (2 HSPs)
scaffold0796 (48-169)||(1727-1845)
scaffold0796 (48-169)||(5750-5868)
[»] scaffold0456 (2 HSPs)
scaffold0456 (97-168)||(920-991)
scaffold0456 (97-168)||(8065-8136)
[»] scaffold0129 (1 HSPs)
scaffold0129 (50-170)||(45268-45386)
[»] scaffold0107 (1 HSPs)
scaffold0107 (108-174)||(40521-40587)
[»] scaffold0222 (1 HSPs)
scaffold0222 (99-163)||(16811-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (99-163)||(116887-116951)
[»] scaffold0310 (1 HSPs)
scaffold0310 (108-174)||(17643-17710)
[»] scaffold0124 (1 HSPs)
scaffold0124 (108-163)||(34276-34331)
[»] scaffold0077 (1 HSPs)
scaffold0077 (20-161)||(3624-3763)
[»] scaffold0019 (1 HSPs)
scaffold0019 (108-174)||(135473-135539)
[»] scaffold0476 (1 HSPs)
scaffold0476 (31-161)||(3295-3423)
[»] scaffold0461 (1 HSPs)
scaffold0461 (99-163)||(8-72)
[»] scaffold0235 (1 HSPs)
scaffold0235 (110-174)||(22582-22646)
[»] scaffold0146 (1 HSPs)
scaffold0146 (99-163)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (99-163)||(101928-101992)
[»] scaffold0815 (1 HSPs)
scaffold0815 (112-174)||(1453-1515)
[»] scaffold0138 (1 HSPs)
scaffold0138 (107-163)||(12296-12352)
[»] scaffold2054 (1 HSPs)
scaffold2054 (111-174)||(717-780)
[»] scaffold0317 (1 HSPs)
scaffold0317 (100-163)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (108-163)||(14997-15052)
[»] scaffold0790 (1 HSPs)
scaffold0790 (142-175)||(5487-5520)
[»] scaffold0096 (1 HSPs)
scaffold0096 (107-167)||(39503-39563)
[»] scaffold0001 (1 HSPs)
scaffold0001 (109-173)||(493019-493082)
[»] scaffold0348 (1 HSPs)
scaffold0348 (109-164)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (109-164)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (109-164)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (109-163)||(1913-1967)
[»] scaffold0609 (1 HSPs)
scaffold0609 (99-164)||(5857-5922)
[»] scaffold0261 (1 HSPs)
scaffold0261 (109-174)||(23559-23624)
[»] scaffold0335 (1 HSPs)
scaffold0335 (107-163)||(2628-2684)


Alignment Details
Target: scaffold0026 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 12007 - 11840
Alignment:
Q  5 attatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaatta 104  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||    
T  12007 attatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttattttccaaaa-ctat-gcaatta 11910  T
Q  105 ggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11909 ggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 111582 - 111741
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  111582 aacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaa 111678  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  111679 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 18873255 - 18873420
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||    
T  18873255 gaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-cta-tgca 18873352  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18873353 attaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 15168070 - 15168230
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||    
T  15168070 gaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-cta-tgca 15168167  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168168 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 14422880 - 14423043
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||    
T  14422880 aacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gcaa 14422977  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttt 167  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14422978 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 10895951 - 10895795
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| |||| |||    
T  10895951 gaacattatattacaagagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactat-gca 10895854  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttac 159  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  10895853 attaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 12710004 - 12709833
Alignment:
Q  1 gaacattatattacaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgc 99  Q
    ||||||||||||||||   ||||||||| |||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||    
T  12710004 gaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-cta-tgc 12709907  T
Q  100 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12709906 aattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 12709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 13123075 - 13122904
Alignment:
Q  1 gaacattatattacaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgc 99  Q
    ||||||||||||||||   ||||||||| |||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||    
T  13123075 gaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-cta-tgc 13122978  T
Q  100 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13122977 aattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13122904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 13743623 - 13743774
Alignment:
Q  20 aattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaa 119  Q
    |||||||| |||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |    
T  13743623 aattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-cta-tgcaattaggtcaa-tttcagga 13743719  T
Q  120 attatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13743720 attataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 16009473 - 16009631
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| ||||| |||||| |||||||| |||||||| |   |||||    
T  16009473 aacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccttaacccacaatttatcttccaaaacca--tgcaa 16009569  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16009570 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 12590756 - 12590633
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  12590756 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 12590660  T
Q  148 tctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||||||||||||    
T  12590659 tctcacccttaccttagttttgcagaa 12590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 13007374 - 13007497
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  13007374 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 13007470  T
Q  148 tctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||||||||||||    
T  13007471 tctcacccttaccttagttttgcagaa 13007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 16677209 - 16677348
Alignment:
Q  22 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaagctattgcaattaggtcaattttcagaaa 120  Q
    |||||| ||||||||| | || | | ||| ||||||||| ||||||||||||| ||||| || |||||||| |||| ||||||||||||||||| |||||    
T  16677209 ttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaattttatcttccaaaaactat-gcaattaggtcaatttttagaaa 16677307  T
Q  121 ttatagattatgattatcgagagatagtctcacccttacct 161  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  16677308 ttatagattatgattattgagagatagtctcacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 17651445 - 17651584
Alignment:
Q  22 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaagctattgcaattaggtcaattttcagaaa 120  Q
    |||||| ||||||||| | || | | ||| ||||||||| ||||||||||||| ||||| || |||||||| |||| ||||||||||||||||| |||||    
T  17651445 ttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaattttatcttccaaaaactat-gcaattaggtcaatttttagaaa 17651543  T
Q  121 ttatagattatgattatcgagagatagtctcacccttacct 161  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  17651544 ttatagattatgattattgagagatagtctcacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 21231015 - 21230949
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 21230949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 20311107 - 20311039
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag--ttttgcagaa 174  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttagatttttgcagaa 20311039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  100 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||| ||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  128 ttatgattatcgagagatagtctcacccttaccttagttttg 169  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  128 ttatgattatcgagagatagtctcacccttaccttagttttg 169  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  128 ttatgattatcgagagatagtctcacccttaccttagttttg 169  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||| ||||||||| ||||| || || ||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 22751036 - 22751201
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||    
T  22751036 gaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-cta-tgca 22751133  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22751134 attaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 38144695 - 38144525
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||  |  |||||    
T  38144695 aacattacattacaatagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa--ttatgcaa 38144599  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaat 175  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38144598 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 38144525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 19512282 - 19512441
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||| |||||||| |||| ||||    
T  19512282 aacattacgttacaatagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gcaa 19512379  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19512380 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 28370213 - 28370055
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  28370213 aacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaa 28370117  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28370116 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 23528573 - 23528690
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  23528573 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 23528669  T
Q  148 tctcacccttaccttagtttt 168  Q
    |||||||||||||||||||||    
T  23528670 tctcacccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 22438803 - 22438736
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcagaa 174  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcagaa 22438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 42961566 - 42961633
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaat 175  Q
    |||||||||||||| ||| ||||| || || ||  | ||| |||||||||||||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 42961633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  111 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  111 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 111776 - 111948
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||    
T  111776 gaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-cta-tgca 111873  T
Q  101 attaggtcaa-ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  111874 attaggtcaatttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 111948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 14762918 - 14762758
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||    
T  14762918 gaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-cta-tgca 14762821  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14762820 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 38310960 - 38310802
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||    
T  38310960 gaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-cta-tgca 38310863  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 161  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310862 attaggtcaatattcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 20247949 - 20247791
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    |||||||||||||||||  |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||    
T  20247949 gaacattatattacaagaaaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-cta-tgca 20247852  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20247851 attaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24192850 - 24193009
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    |||||| | |||||||  ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| |||    
T  24192850 gaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gca 24192948  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24192949 attaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 9534224 - 9534382
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    ||||||| |||||||  ||||||||| ||||| |||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  9534224 aacattacattacaacagaattaacatgatcaataccca-ttccactcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaa 9534320  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9534321 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 23370665 - 23370505
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| |||| ||||    
T  23370665 aacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactat-gcaa 23370568  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  23370567 ttaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 41455178 - 41455087
Alignment:
Q  80 tattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41455178 tattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 41455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 16801606 - 16801457
Alignment:
Q  22 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaat 121  Q
    |||||| ||||||||| | |||| | ||| ||||||||| || |||||||| |||||||  | | |||||||||  ||||| ||||||||||||||||||    
T  16801606 ttaacatgatcattacaccattctcctcaaaatcatcatcaa-ccctaaccttcaattttatcttcaaaagctaa-gcaatcaggtcaattttcagaaat 16801509  T
Q  122 tatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  16801508 tatatat-atgattattgagagatagtctcacccttaccttagttttgcagaa 16801457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 24933941 - 24933828
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| |||||||||   |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  24933941 tcagaatcatcatcaaaccctaattttcatattattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 24933845  T
Q  148 tctcacccttaccttag 164  Q
    |||||||||||||||||    
T  24933844 tctcacccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 55499244 - 55499185
Alignment:
Q  20 aattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt 80  Q
    |||||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  55499244 aattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattt 55499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    |||||||| |||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 912 - 740
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| | |||| || |||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||| |||| |||    
T  912 gaacattatattacaagagtattatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactat-gca 814  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  813 attaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 23057833 - 23057993
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||    
T  23057833 gaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-cta-tgca 23057930  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23057931 attaggtcaattttcaggaattatagattatgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 29614297 - 29614136
Alignment:
Q  12 tacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaat 111  Q
    |||||| ||||||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||| | |||  ||| |||| |||||||||    
T  29614297 tacaagagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttttccaaaattat-gcaactaggtcaat 29614199  T
Q  112 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29614198 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 29614136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 10986341 - 10986170
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    |||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||| |||    
T  10986341 gaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gca 10986244  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||  ||||||||    
T  10986243 attaggtcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgcagaa 10986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 18800332 - 18800503
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatt-tattttccaaaagctattgc 99  Q
    |||||| | |||||||  ||||||||| ||||||||| || |||||| |||||||||||| |||||||||||||||||| |||||||||||| |||  ||    
T  18800332 gaacatcacattacaacagaattaacatgatcattactca-ttccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaa-ctaa-gc 18800428  T
Q  100 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  18800429 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagttttgcagaa 18800503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 23839093 - 23839253
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    |||||||| |||||||  ||||||||| ||||| |||||| | ||||| ||||||||||| ||||||||||||||||||||| |||||||  |||| |||    
T  23839093 gaacattacattacaacagaattaacatgatcaatacccattcccctt-agaatcatcatcaaaccctaaccctcaatttatcttccaaacactat-gca 23839190  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23839191 attaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 930227 - 930085
Alignment:
Q  29 gatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagat 128  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||| |||||||    
T  930227 gatcattaccca-ttcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaa-ctata-caattaggtcaattttcagaaactatagat 930131  T
Q  129 tatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  930130 tatgattattgagagatagtctcacccttaccttagttttgcagaa 930085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 4477753 - 4477912
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    ||||||| |||||||  |||||| || ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| |||| ||||    
T  4477753 aacattacattacaacagaattagcatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactat-gcaa 4477850  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4477851 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 12168305 - 12168428
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  12168305 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 12168401  T
Q  148 tctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||||||||||||    
T  12168402 tctcacccttaccttagttttgcagaa 12168428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 19287214 - 19287337
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  19287214 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19287310  T
Q  148 tctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||||||||||||    
T  19287311 tctcacccttaccttagttttgcagaa 19287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 19785982 - 19785859
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  ||| |||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  19785982 tcagaatcatcatcaaaccctaactttcattttattttccaaaa-ctatt-caactaggtcaattt-cagaaattatagattatgattattgagagatag 19785886  T
Q  148 tctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||||||||||||    
T  19785885 tctcacccttaccttagttttgcagaa 19785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 19878398 - 19878521
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  19878398 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19878494  T
Q  148 tctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||||||||||||    
T  19878495 tctcacccttaccttagttttgcagaa 19878521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 19884174 - 19884297
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  19884174 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19884270  T
Q  148 tctcacccttaccttagttttgcagaa 174  Q
    ||||||||| |||||||||||||||||    
T  19884271 tctcaccctaaccttagttttgcagaa 19884297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  79 ttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34640069 ttattttccaaaa-ctatt-caattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 34646725 - 34646660
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34646725 caattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 25469816 - 25469704
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||| ||||| |||||||||   |||  ||||||||||||| | ||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  25469816 tcagaattatcatcaaaccctaattttcatattattttccaaaacc-att-caattaggtcaattt-cagaa-ttatagattatgattattgagagatag 25469721  T
Q  148 tctcacccttaccttag 164  Q
    |||||||||||||||||    
T  25469720 tctcacccttaccttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 21565353 - 21565214
Alignment:
Q  20 aattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaa 119  Q
    |||||||| |||||||||||| | ||||| ||||||||||| ||||||||||||||||||  || |||  ||| |   |||||||||||||||||| |||    
T  21565353 aattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctcaatt--ttatcctcaaggttaagcaattaggtcaattttccgaa 21565257  T
Q  120 attatagattat-gattatcgagagatagtctcacccttacct 161  Q
    |||| | |||||  ||||  |||||||||||||||||||||||    
T  21565256 attaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 24512899 - 24512833
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||| |||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcagaa 24512833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  111 ttttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 161  Q
    |||||||||||||| |||| |||||||| || ||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 31252413 - 31252478
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||| | ||||||||||||||||| ||||| || ||  | ||||| |||||||||||||||||    
T  31252413 caattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 1073 - 1240
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||| ||| ||||    
T  1073 gaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaa-cta-tgca 1170  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgca 171  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1171 attaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 50074 - 50241
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||| ||| ||||    
T  50074 gaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaa-cta-tgca 50171  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgca 171  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50172 attaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 8045992 - 8045822
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    ||||||||||||||||| |||||||||  ||| ||||||| |||||||||||||  || | |||||||||||||||||||||||||||||| |||| |||    
T  8045992 gaacattatattacaagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaatttattttccaaaa-ctat-gca 8045895  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8045894 attaggtcaattt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 8045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 11848002 - 11848179
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttc------caaaagct 94  Q
    ||||||||||||| ||  | ||||||| |||||||||||| | | |||||||||| |||| |||||||||||||||||| |||||       ||||| ||    
T  11848002 gaacattatattataaaaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgattttaatttttcaaaa-ct 11848100  T
Q  95 attgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    || || | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11848101 at-gccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11848179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 53483646 - 53483760
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| |||||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  53483646 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 53483743  T
Q  148 tctcacccttaccttag 164  Q
    |||||||||||||||||    
T  53483744 tctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 15408139 - 15408205
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| | |||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatctgcagaa 15408205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 14486661 - 14486713
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttacct 161  Q
    ||||||||||||||||| |||||||| || ||  |||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 158  Q
    |||||||||||||||| || | ||| ||||| ||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  128 ttatgattatcgagagatagtctcacccttaccttagttttg 169  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 14557 - 14398
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    |||||| | |||||||  ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| |||    
T  14557 gaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gca 14459  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 161  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14458 attaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 11236 - 11407
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatt-tattttccaaaagctattgc 99  Q
    |||||| | |||||||  ||||||||| ||||||||| || |||||| |||||||||||| |||||||||||||||||| |||||||||||| |||  ||    
T  11236 gaacatcacattacaacagaattaacatgatcattactca-ttccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaa-ctaa-gc 11332  T
Q  100 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11333 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 206 - 356
Alignment:
Q  20 aattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaa 119  Q
    |||||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  206 aattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cagaa 301  T
Q  120 attatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  302 attatagattatggttattgagagatagtctcacccttaccttagttttgcagaa 356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 23866509 - 23866680
Alignment:
Q  1 gaacattatattacaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgc 99  Q
    ||||||||||||||||   ||||||||| |||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||    
T  23866509 gaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaa-cta-tgc 23866606  T
Q  100 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23866607 aattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 23866680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 44477519 - 44477678
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  44477519 aacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaa 44477615  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44477616 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 44492677 - 44492836
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  44492677 aacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaa 44492773  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44492774 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 8727893 - 8727735
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    |||||||| |||||||  ||||||||| ||||| |||||| | ||| ||||||||||| | ||||||||||||||||||||| |||||||| |||| |||    
T  8727893 gaacattacattacaacagaattaacatgatcaataccca-tacccctcagaatcatcgtcaaaccctaaccctcaatttatcttccaaaaactat-gca 8727796  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 161  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  8727795 attaggtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 17054533 - 17054656
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  17054533 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 17054629  T
Q  148 tctcacccttaccttagttttgcagaa 174  Q
    ||||||||||||||| |||||||||||    
T  17054630 tctcacccttaccttggttttgcagaa 17054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 18614271 - 18614327
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 14056619 - 14056553
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcagaa 14056553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 27941014 - 27940840
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaat--ttattttccaaaagctattg 98  Q
    |||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||  | ||||  ||||||| ||| | | |||     
T  27941014 gaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaattcccaattcttatttttcaagaacaattc 27940916  T
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaat 175  Q
     ||| |   |||||||||||||| ||| ||||| || || ||  | ||| |||||||||||||||||||||||||||    
T  27940915 taatca-aacaattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 27940840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 25111976 - 25112042
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||| ||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaa 25112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||| | ||||||||||| || ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 20437184 - 20437024
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    |||||||| |||||||   |||||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||| |||    
T  20437184 gaacattacattacaacataattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactat-gca 20437087  T
Q  101 attaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20437086 attaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 41111977 - 41112100
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  41111977 tcagaatcatcatcaaaccctaactttcatcttatttttcaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 41112073  T
Q  148 tctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||||||||||||    
T  41112074 tctcacccttaccttagttttgcagaa 41112100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 161  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 19661612 - 19661454
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||    
T  19661612 aacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctat-gcaa 19661516  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19661515 ttaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 6483614 - 6483772
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  6483614 aacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaa 6483710  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6483711 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 6487081 - 6487239
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  6487081 aacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaa 6487177  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6487178 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 26583744 - 26583892
Alignment:
Q  22 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaat 121  Q
    |||||| |||||||||||  ||||| ||||||||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||    
T  26583744 ttaacatgatcattaccct-ttcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cagaaat 26583839  T
Q  122 tatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26583840 tatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 26583892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 5706137 - 5706023
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| |||||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| ||||||||||||||||||  |||||||||    
T  5706137 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattaatgagagatag 5706040  T
Q  148 tctcacccttaccttag 164  Q
    |||||||||||||||||    
T  5706039 tctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 23101604 - 23101463
Alignment:
Q  20 aattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaa 119  Q
    |||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||||  || |||  ||| |    ||||||||||||||||| |||    
T  23101604 aattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaatt--ttatcctcaaggttaaacaattaggtcaattttccgaa 23101508  T
Q  120 attatagattat-gattatcgagagatagtctcacccttacctta 163  Q
    |||| | |||||  ||||  |||||||||||||||||||||||||    
T  23101507 attacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 23089196 - 23089057
Alignment:
Q  20 aattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaa 119  Q
    |||||||| |||||||||||| | ||||| ||||||||||| ||||||||||||||||||  || |||  ||| |   |||||||||||||||||| |||    
T  23089196 aattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctcaatt--ttatcctcaaggttaagcaattaggtcaattttccgaa 23089100  T
Q  120 attatagattat-gattatcgagagatagtctcacccttacct 161  Q
    |||| | |||||  ||||  |||||||||||||||||||||||    
T  23089099 attaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 23878922 - 23879060
Alignment:
Q  20 aattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaa 119  Q
    |||||||| ||||||||||| |||||| ||||||||||||  || ||||||||||||||||| |  ||  ||| |   |||||||||||||||||  |||    
T  23878922 aattaacatgatcattaccccattcccctcagaatcatcaacaa-ccctaaccctcaatttaat--cctcaaggttaagcaattaggtcaatttttcgaa 23879018  T
Q  120 attatagattatgattatcgagagatagtctcacccttacct 161  Q
    |||||| || || ||||  |||||||||||||||||||||||    
T  23879019 attatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 26885133 - 26885246
Alignment:
Q  58 cattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctt 157  Q
    ||||| |||||||  |||||||| || ||||| | ||||| || |||| | ||||||||||||||||| |||| |||||| || ||||| || |||||||    
T  26885133 cattataccctaattctcaattttttctccaagaactattcca-ttagattaattttcagaaattatacatta-gattattgaaagataatcccaccctt 26885230  T
Q  158 accttagttttgcaga 173  Q
    |||||||  |||||||    
T  26885231 accttagaattgcaga 26885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 18082 - 18236
Alignment:
Q  19 gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcaga 118  Q
    ||||||||| || ||||||| | ||||| | ||||||||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||| |    
T  18082 gaattaacatgaccattacc-atttcccgttagaatcatcattaaaccttaaccctcaatttattttcctaaagctaa-gcaattaggtcaattttcaaa 18179  T
Q  119 aattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaat 175  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18180 aattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 18236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 10355 - 10195
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| |||| ||||    
T  10355 aacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactat-gcaa 10258  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  10257 ttaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 1685 - 1525
Alignment:
Q  2 aacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaa 101  Q
    ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| |||| ||||    
T  1685 aacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactat-gcaa 1588  T
Q  102 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1587 ttaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 2057 - 1887
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    |||||||| |||||||| |||||||||  ||||||||||| |  || ||| ||||||||| |||||||||||||||| ||||||||||||| ||||  ||    
T  2057 gaacattaaattacaagagaattaacataatcattacccatt--ccatcaaaatcatcatcaaaccctaaccctcaaattattttccaaaa-ctata-ca 1962  T
Q  101 attaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  1961 attaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 8734 - 8564
Alignment:
Q  1 gaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgca 100  Q
    |||||||| |||||||| |||||||||  ||||||||||| |  || ||| ||||||||| |||||||||||||||| ||||||||||||| ||||  ||    
T  8734 gaacattaaattacaagagaattaacataatcattacccatt--ccatcataatcatcatcaaaccctaaccctcaaattattttccaaaa-ctata-ca 8639  T
Q  101 attaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  8638 attaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 30772 - 30923
Alignment:
Q  22 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaagctattgcaattaggtcaattttcagaaa 120  Q
    |||||| |||| |||| | |||||| ||| ||||||||| ||||||||| ||||||||| |  |||||||| |||| |||||||||||||||||||||||    
T  30772 ttaacatgatcgttacaccattcccctcaaaatcatcatcaaaccctaatcctcaattttaccttccaaaa-ctat-gcaattaggtcaattttcagaaa 30869  T
Q  121 ttatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30870 ttatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 30923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 1845 - 1727
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  1845 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 1749  T
Q  148 tctcacccttaccttagttttg 169  Q
    ||||||||||||||||||||||    
T  1748 tctcacccttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 5868 - 5750
Alignment:
Q  48 tcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatag 147  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  5868 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 5772  T
Q  148 tctcacccttaccttagttttg 169  Q
    ||||||||||||||||||||||    
T  5771 tctcacccttaccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 920 - 991
Alignment:
Q  97 tgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 168  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  920 tgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 8065 - 8136
Alignment:
Q  97 tgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 168  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8065 tgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 45386 - 45268
Alignment:
Q  50 agaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtc 149  Q
    ||||||||||| |||||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattattgagagatagtc 45289  T
Q  150 tcacccttaccttagttttgc 170  Q
    ||||||||||||||| |||||    
T  45288 tcacccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 40587 - 40521
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 40521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 17643 - 17710
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcagaa 174  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcagaa 17710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

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Target: scaffold0077 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 3763 - 3624
Alignment:
Q  20 aattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaa 119  Q
    |||||||| |||||||||||| | ||| ||||||||||||| ||||||||||||||||||  || |||  ||| |   |||||||||||||||||| |||    
T  3763 aattaacatgatcattaccca-tccccctcagaatcatcatcaaaccctaaccctcaatt--ttatcctcaaggttaagcaattaggtcaattttccgaa 3667  T
Q  120 attatagattat-gattatcgagagatagtctcacccttacct 161  Q
    |||| | |||||  ||||  |||||||||||||||||||||||    
T  3666 attacatattatctattaatgagagatagtctcacccttacct 3624  T

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Target: scaffold0019 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 135473 - 135539
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||| |||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagattttcagaa 135539  T

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Target: scaffold0476 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 3423 - 3295
Alignment:
Q  31 tcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagatta 130  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||||||  || |||  ||| |   |||||||||||||||||| ||||||| | ||||    
T  3423 tcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaatt--ttatccccaaggttaagcaattaggtcaattttccgaaattacatatta 3327  T
Q  131 t-gattatcgagagatagtctcacccttacct 161  Q
    |  ||||  |||||||||||||||||||||||    
T  3326 tctattaatgagagatagtctcacccttacct 3295  T

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Target: scaffold0461 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

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Target: scaffold0235 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 22646 - 22582
Alignment:
Q  110 attttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcagaa 22582  T

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Target: scaffold0146 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

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Target: scaffold0020 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||| ||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

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Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 1453 - 1515
Alignment:
Q  112 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    |||||||||||||| |||| ||| || ||||| ||||||||||||||||||| ||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaa 1515  T

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Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

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Target: scaffold2054 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 717 - 780
Alignment:
Q  111 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||||||||| |||| ||| || || ||||| || ||||||||||||||||||||||||    
T  717 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcagaa 780  T

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Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  100 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

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Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  108 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

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Target: scaffold0790 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 5487 - 5520
Alignment:
Q  142 agatagtctcacccttaccttagttttgcagaat 175  Q
    ||||||||||||||||||||||||||||||||||    
T  5487 agatagtctcacccttaccttagttttgcagaat 5520  T

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Target: scaffold0096 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttt 167  Q
    ||||||||| ||||||||| |||||||| || ||||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 493082 - 493019
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcaga 173  Q
    ||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||  |||||||    
T  493082 aattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcaga 493019  T

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Target: scaffold0348 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

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Target: scaffold0127 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

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Target: scaffold0023 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||||||||||||| ||||||| ||| || ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

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Target: scaffold1318 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||||||| ||||||| ||| || ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

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Target: scaffold0609 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 5922 - 5857
Alignment:
Q  99 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 164  Q
    ||||||| | ||||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  5922 caattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

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Target: scaffold0261 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 23624 - 23559
Alignment:
Q  109 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 174  Q
    ||||||||||||||||| |||||||| ||  | ||||| || ||||||||||||||  ||||||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgcagaa 23559  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  107 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 163  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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