View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1157_low_4 (Length: 494)
Name: NF1157_low_4
Description: NF1157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1157_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 98 - 481
Target Start/End: Original strand, 10323137 - 10323519
Alignment:
| Q |
98 |
aatattcttggagctaaattaatgtacttttcatagttagaatcttttagttgatataaatattttagccaccaaaataacggagagtgataatttagat |
197 |
Q |
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| T |
10323137 |
aatattctaggaactaaattaatgtacttttcatagttagaatcttttagttgatataaatattttagccaccaaaataacggagagtgataatttagat |
10323236 |
T |
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| Q |
198 |
accaaattaactattctttaaaatattctccattgtaaaataaaaataatttttcagtcattaagatactggaatatggtataaaatgactcgcaagttg |
297 |
Q |
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| T |
10323237 |
accaaattaactattctttaaaatactctccattgtaaaataaaaataatttttcagtcat-aagatactggaatatggtataaaatgactcgcaagttg |
10323335 |
T |
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| Q |
298 |
gatcacttgtagtgtcacatcagacatttgtggtggtattacaatttacaaatatattgtatttattgaaacaattgtgaatataaaggagctgatcatt |
397 |
Q |
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| T |
10323336 |
gatcacttgtagtgtcacatcagacatttgtggtggtattacaatttacaaatatattgtatttattgaaacaattgtgaatataaaggagctgatcatt |
10323435 |
T |
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| Q |
398 |
gatagatcagtacatgacaaagatacgcatgtatnnnnnnnttagaataagaattcaactttgtttacattggtagtttgtcct |
481 |
Q |
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| T |
10323436 |
gatagatcagtacatgacaaagatacgcatgtataaaaaaattagaataagaattcaactttgtttacattggtagtttgtcct |
10323519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 1965614 - 1965710
Alignment:
| Q |
7 |
gacattacacattcttagactttcgaatgacttttaagtattggttgaccatggatgtgtaacttgcttgaataattgatttacacaagtgaatatt |
103 |
Q |
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| T |
1965614 |
gacattacacattcttagactttcgaatgacttttaagtattggttgaccatggatgtgtaacttgcttgaataattgatttacacaagtgaatatt |
1965710 |
T |
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