View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1157_low_5 (Length: 492)
Name: NF1157_low_5
Description: NF1157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1157_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 29 - 458
Target Start/End: Complemental strand, 11024587 - 11024170
Alignment:
| Q |
29 |
acaaaataactcaaatcctgaatagccacacatgggtgattgacggtttttgattcggaaagggaacttgataacttgatttccacatgttaaatcttct |
128 |
Q |
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| T |
11024587 |
acaaaataactcaaatcctgaatagccacacatgggtgattgacggtttttgattcggaaagggaacttgataacttgatttccacatgttaaatcttct |
11024488 |
T |
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| Q |
129 |
ggacatgttgttgttccatgcacgaacatattaaggtaaaacacgaacaaaaaccatcccataacatgagaataagtgttcatgatattgattcttaaat |
228 |
Q |
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| T |
11024487 |
ggacatgttgttgttccatgcacgaacatattaaggtaaaacacgaacaacaaccatcccataacatgagaataagtgttcatgatattgattcttaaat |
11024388 |
T |
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| Q |
229 |
cttgagcaatagtaatctgtctcagactcttaactatagatcactgtgactataacaactttcaaataatttcctctcataagatcagatggaattattt |
328 |
Q |
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| T |
11024387 |
cttgagcaatagtaatctgtctcagactcttaactatagatcactgtgactataacagctttcaaataatttcctctcataagatcagatggaattattt |
11024288 |
T |
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| Q |
329 |
gttgggtatgttaacaatattcaaacatcaaaaagtagtgtacatcactttccaacacacnnnnnnnnatatttatttccttaataaaagtaccgacatc |
428 |
Q |
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| T |
11024287 |
gttgggtatgttaacaatattcaaacatcaaaaagtagtgtacatcactttccaacacac------------ttcttttatatttaaaagtaccgacatc |
11024200 |
T |
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| Q |
429 |
actttttaacgttttcctttttgctttagt |
458 |
Q |
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| T |
11024199 |
actttttaacgttttcctttttgctttagt |
11024170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 10976912 - 10976820
Alignment:
| Q |
33 |
aataactcaaatcctgaatagccacacatgggtgattgacggtttttgattcggaaagggaacttgataacttgatttccacatgttaaatct |
125 |
Q |
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| T |
10976912 |
aataactcaaaacctggatagccacacatgggtgcttgacggtttttgaatcagaaaggaaatttgatattttgatttccacatcttaaatct |
10976820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 10928978 - 10928918
Alignment:
| Q |
73 |
ggtttttgattcggaaagggaacttgataacttgatttccacatgttaaatcttctggaca |
133 |
Q |
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| T |
10928978 |
ggtttttgatttgaaaaggaaatttgataacttgatttccacatgttaaatcttctggaca |
10928918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 11039602 - 11039544
Alignment:
| Q |
73 |
ggtttttgattcggaaagggaacttgataacttgatttccacatgttaaatcttctgga |
131 |
Q |
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| T |
11039602 |
ggtttttgatatggaaagggaatttgataacttgatttccacatgttaaatcttgtgga |
11039544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 11039497 - 11039430
Alignment:
| Q |
157 |
tattaaggtaaaacacgaacaaaaaccatcccataacatgagaataagtgttcatgatattgattctt |
224 |
Q |
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| T |
11039497 |
tattaaggtaacatacgagcaacaataatcccataacatgataataagtgttcatgatattgattctt |
11039430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 11001119 - 11001165
Alignment:
| Q |
87 |
aaagggaacttgataacttgatttccacatgttaaatcttctggaca |
133 |
Q |
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| T |
11001119 |
aaagggaatttgataacttgatttccacatgttaaatcttcttgaca |
11001165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 10906472 - 10906420
Alignment:
| Q |
73 |
ggtttttgattcggaaagggaacttgataacttgatttccacatgttaaatct |
125 |
Q |
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| T |
10906472 |
ggtttttgatatggaaagggaatttaataacttgatttccacatgttaaatct |
10906420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 10995462 - 10995522
Alignment:
| Q |
73 |
ggtttttgattcggaaagggaacttgataacttgatttccacatgttaaatcttctggaca |
133 |
Q |
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| T |
10995462 |
ggtttttgatatggaaaagaaatttgataacttgatttccacatgttaaatcttcttgaca |
10995522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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