View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1157_low_6 (Length: 482)
Name: NF1157_low_6
Description: NF1157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1157_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 160 - 453
Target Start/End: Original strand, 48769484 - 48769777
Alignment:
| Q |
160 |
atattgtaagaaatggaaaaatttcggaaagaaacattaatacgaaaatactgataaaatatccatgacatgattcccttgtgaaatattttcgacatac |
259 |
Q |
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| T |
48769484 |
atattgtaagaaatggaaaaatttcggaaagaaacattaatacgaaaatactgataaaatatccatgacatgattcccttgtgaaatattttcgacatac |
48769583 |
T |
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| Q |
260 |
tttccaatcaaaattcgaccaggagnnnnnnnttagagaaatatgtaactataccatcaaagactccaaaaaggccaacgatttcaccatcgacaccgtc |
359 |
Q |
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| T |
48769584 |
tttccaatcaaaattcgaccaggagaaaaaaattagagaaatatgtaactataccatcaaagactccaaaaaggccaacgatttcaccatcgacaccgtc |
48769683 |
T |
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| Q |
360 |
aattctggtctcataaaaatcttccattgaagatctcttgccaggcgagctagcatacccatagctaaactttccattgtgactacatgtacaa |
453 |
Q |
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| T |
48769684 |
aattctggtctcataaaaatcttccattgaagatctcttgccaggcgagctagcatacccatagctaaactttccattgtgactacatgtacaa |
48769777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 48769401 - 48769488
Alignment:
| Q |
10 |
gcagagaacgatagaacaatactataacaaaatatggaggacatcactaaaaaatggaagacaaaaatacaaaatcaggctatatatt |
97 |
Q |
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| T |
48769401 |
gcagagaacgatagaacaatactataacaaaatatggaggacatcactaaaaaatggaagacaaaagtacaaaatcaggctatatatt |
48769488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 295 - 437
Target Start/End: Complemental strand, 3409562 - 3409420
Alignment:
| Q |
295 |
gagaaatatgtaactataccatcaaagactccaaaaaggccaacgatttcaccatcgacaccgtcaattctggtctcataaaaatcttccattgaagatc |
394 |
Q |
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| T |
3409562 |
gagaattatgtaaatataccatcaaaaactccaaaaaggccaacaacttcgccattaatgccgtcaattcttgtctcataaaaatcttccattgaagatc |
3409463 |
T |
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| Q |
395 |
tcttgccaggcgagctagcatacccatagctaaactttccatt |
437 |
Q |
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| T |
3409462 |
tcttgccaggggagctagcatatccatagctgaattttccatt |
3409420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 295 - 437
Target Start/End: Original strand, 3437261 - 3437403
Alignment:
| Q |
295 |
gagaaatatgtaactataccatcaaagactccaaaaaggccaacgatttcaccatcgacaccgtcaattctggtctcataaaaatcttccattgaagatc |
394 |
Q |
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| T |
3437261 |
gagaattatgtaaatataccatcaaaaactccaaaaaggccaacaacttcgccattaatgccgtcaattcttgtctcataaaaatcttccattgaagatc |
3437360 |
T |
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| Q |
395 |
tcttgccaggcgagctagcatacccatagctaaactttccatt |
437 |
Q |
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| T |
3437361 |
tcttgccaggggagctagcatatccatagctgaattttccatt |
3437403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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