View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1157_low_9 (Length: 451)
Name: NF1157_low_9
Description: NF1157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1157_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 74 - 422
Target Start/End: Original strand, 35938701 - 35939049
Alignment:
| Q |
74 |
attttatagagatgattttgaaccaaaaacaaccttaaatcatccctcttccaatgatgaaaagaatgtagcggttaggttttttgttgggtactgaaac |
173 |
Q |
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| T |
35938701 |
attttatagagatgattttgaaccaaaaacaaccttaaatcatccctcttccaatgatgaaaagaatgcagcggttagattttttgttgggtactgaaac |
35938800 |
T |
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| Q |
174 |
atctttttgttgggtactgaaacatctaaacatcatatagttattccnnnnnnnatattaactttctttgtttaaatgacatgacatacacatttctctt |
273 |
Q |
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| T |
35938801 |
atctttttgttgggtactgaaacatctaaacatcatatagttattcctttttttatattaactttctttgtttaaatgacattacatacacatttctctt |
35938900 |
T |
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| Q |
274 |
ctatttttccccttaggcatctacgatggtaggtatttatccttataagcgaaagtgctaaatagacattctcattgttgcataagaaatatgagtattt |
373 |
Q |
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| T |
35938901 |
ctatttttccccttaggcatctacgatggtaggtatttatccttataagcgaaagtgctaaatagacattctcattgttgcataagaaatatgagtattt |
35939000 |
T |
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| Q |
374 |
atagagattttttgaaaaaggagtatttatagagatgtgtacttttata |
422 |
Q |
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| T |
35939001 |
atagagattttttgaaaaaagagtatttatagagatgtgtacttttata |
35939049 |
T |
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