View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11580_high_2 (Length: 533)

Name: NF11580_high_2
Description: NF11580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11580_high_2
NF11580_high_2
[»] chr4 (1 HSPs)
chr4 (420-518)||(36085951-36086048)
[»] chr6 (3 HSPs)
chr6 (124-179)||(24414328-24414383)
chr6 (197-236)||(31038975-31039014)
chr6 (175-217)||(1759099-1759141)
[»] chr7 (2 HSPs)
chr7 (97-158)||(439887-439948)
chr7 (423-453)||(1335061-1335091)
[»] chr5 (1 HSPs)
chr5 (167-237)||(31184231-31184299)
[»] chr8 (1 HSPs)
chr8 (174-211)||(14983485-14983522)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 420 - 518
Target Start/End: Original strand, 36085951 - 36086048
Alignment:
Q  420 cataagaatctaaaacctaaaactcataaattaggaaaaactca-caattaggatcatgaaactcacaaatcagaaattcatcatcaaattcagttgaat 518  Q
    |||||||||||||||||||||||||||||| |||   |||||||  |||||||||| |||||||  ||||||||||| ||||||||||||||||||||||    
T  36085951 cataagaatctaaaacctaaaactcataaactagattaaactcataaattaggatcgtgaaact--caaatcagaaactcatcatcaaattcagttgaat 36086048  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 24414328 - 24414383
Alignment:
Q  124 tcaaaccgatacaattaatagatggaaggaagaaatcttcaattcttcactaacaa 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24414328 tcaaaccgatacaattaatagatggaaggaagaaatcttcaattctgcactaacaa 24414383  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 31039014 - 31038975
Alignment:
Q  197 ttctaaaacctaacattacaagtattcaattaaaaattca 236  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  31039014 ttctaaaacctaacattacaagtattcaattttaaattca 31038975  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 1759141 - 1759099
Alignment:
Q  175 aacaaacacactaacatctcaattctaaaacctaacattacaa 217  Q
    |||||| |||||||||| ||||| |||||||||||||||||||    
T  1759141 aacaaatacactaacatttcaatcctaaaacctaacattacaa 1759099  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 439887 - 439948
Alignment:
Q  97 tcacactgctttctctcttttagcttctcaaaccgatacaattaatagatggaaggaagaaa 158  Q
    |||||||  ||||||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  439887 tcacactaatttctctcttttagcttctcaaaccaattcaattaacagatggaaggaagaaa 439948  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 453
Target Start/End: Original strand, 1335061 - 1335091
Alignment:
Q  423 aagaatctaaaacctaaaactcataaattag 453  Q
    |||||||||||||||||||||||||||||||    
T  1335061 aagaatctaaaacctaaaactcataaattag 1335091  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 31184299 - 31184231
Alignment:
Q  167 tcttcactaacaaacacactaacatctcaattctaaaacctaacattacaagtattcaattaaaaattcag 237  Q
    |||||| ||||||||| || ||||| ||||||||||||||||  || ||||||||| ||||||||||||||    
T  31184299 tcttcattaacaaacaaacaaacatttcaattctaaaaccta--ataacaagtattgaattaaaaattcag 31184231  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 14983485 - 14983522
Alignment:
Q  174 taacaaacacactaacatctcaattctaaaacctaaca 211  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  14983485 taacaaacacactaacatttcaattttaaaacctaaca 14983522  T

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