View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11580_high_3 (Length: 486)
Name: NF11580_high_3
Description: NF11580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11580_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 30 - 460
Target Start/End: Original strand, 53679263 - 53679693
Alignment:
| Q |
30 |
gaaccaaactgttattaaactaaactggtttataaatgttcagactgaaccatatgaaaaggtctggttactaactgaactgttttaacaagaagtgaaa |
129 |
Q |
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| T |
53679263 |
gaaccaaactgttattgaactaaactggtttataaatgttcagactgaaccatatgaaaaggtctggttactaactgaactgttttaacaagaactgaaa |
53679362 |
T |
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| Q |
130 |
ttgaaccagaatataactagcttaaaaacagaactgaaacatgacatatttaaaacgttaaacgtggtgaacaaaattgaaactttttaccaatctttca |
229 |
Q |
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| T |
53679363 |
ttgaaccagaatataactagcttaaaaacaaaactgaaacataacatatttaaaacgttaaacatggtgaacaaaattgaaattttttaccaatctttca |
53679462 |
T |
|
| Q |
230 |
atcaaacaattcaagaatcgtgaagggagttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaat |
329 |
Q |
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| T |
53679463 |
atcaaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaat |
53679562 |
T |
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| Q |
330 |
caaacgaaagtaagaaaggtgattcaatgttgattaagcaggtataattgaatttaaaatatagttagattaaaaacgttaataataaattacagattgg |
429 |
Q |
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| T |
53679563 |
caaacgaaagtaagaaaggtgattcggtgttgattaagcaggtataattgaatttaaaatataattagattaaaaacgttaataataaattacagattgg |
53679662 |
T |
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| Q |
430 |
aaataaatatgaaatgggagattgagaatga |
460 |
Q |
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| T |
53679663 |
aaataaatatgaaatgggagattgagaatga |
53679693 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 2045066 - 2045022
Alignment:
| Q |
73 |
actgaaccatatgaaaaggtctggttactaactgaactgttttaa |
117 |
Q |
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| T |
2045066 |
actgaaccatatgaaaaggattggttattagctgaactgttttaa |
2045022 |
T |
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