View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11580_low_1 (Length: 372)
Name: NF11580_low_1
Description: NF11580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11580_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 52243119 - 52242769
Alignment:
| Q |
16 |
aaagttttagaaatgtttttaaattaaattggagtatttgaatttgggggatgttagcaaagaaacaaagtattgctgaaagaaaaggacagaagccnnn |
115 |
Q |
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| T |
52243119 |
aaagttttagaaatgtttttatattaaattggagtatttgaatttgggggatgttagcaaagaaacaaagtattgctgaaagaaaaggacagaagccaga |
52243020 |
T |
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| Q |
116 |
nnnnnnnnngtagaatgagaggctgtggtgtgttcattttgatttcagttacaatatgtagacatttgatttatttagtatcacaaattattcacacttt |
215 |
Q |
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| T |
52243019 |
gag------gtagaatgagaggctgtggtgtgttcattttgatttcagttacaatatgtagacatttgatttatttagtatcacaaattattcacacttt |
52242926 |
T |
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| Q |
216 |
atccatattgtattatgtggttttgcaatttctactagatttccattgccacctaactctgtcctcggtgacaattcaaattattatcatttcaaaattc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
52242925 |
atccatattgtattatgtggttttgcaatttctactagatttccagtgccacctaactctgtccttggtgacaattcaaattattattatttcaaaattc |
52242826 |
T |
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| Q |
316 |
tcttcactgacatcattgttctttctcacaaacctctcagttcagttcagttctgtt |
372 |
Q |
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| T |
52242825 |
tcttcactgacatcattgttctttctcacaaacctctcagttcagttcagttctgtt |
52242769 |
T |
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