View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11580_low_2 (Length: 370)

Name: NF11580_low_2
Description: NF11580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11580_low_2
NF11580_low_2
[»] chr5 (7 HSPs)
chr5 (1-350)||(22967595-22967944)
chr5 (245-346)||(18222510-18222611)
chr5 (250-350)||(17382037-17382137)
chr5 (250-350)||(24517367-24517467)
chr5 (250-338)||(25680621-25680709)
chr5 (252-350)||(23157792-23157890)
chr5 (252-350)||(24841766-24841864)
[»] chr7 (1 HSPs)
chr7 (245-350)||(1255210-1255315)
[»] chr1 (7 HSPs)
chr1 (250-350)||(12810335-12810435)
chr1 (245-344)||(18301000-18301099)
chr1 (251-350)||(34381721-34381820)
chr1 (245-350)||(30675497-30675602)
chr1 (251-320)||(31313595-31313664)
chr1 (245-343)||(11769991-11770089)
chr1 (253-333)||(27461186-27461266)
[»] chr6 (2 HSPs)
chr6 (251-350)||(12972387-12972486)
chr6 (250-311)||(30355377-30355438)
[»] chr8 (5 HSPs)
chr8 (250-350)||(12956502-12956602)
chr8 (253-350)||(27097806-27097903)
chr8 (260-350)||(14977118-14977209)
chr8 (250-350)||(28901342-28901442)
chr8 (251-311)||(31436531-31436591)
[»] chr3 (2 HSPs)
chr3 (251-350)||(8402553-8402652)
chr3 (245-295)||(27415236-27415286)
[»] chr2 (5 HSPs)
chr2 (245-350)||(21505136-21505241)
chr2 (252-350)||(21843006-21843104)
chr2 (251-348)||(19541052-19541149)
chr2 (258-343)||(24047402-24047487)
chr2 (245-350)||(35031715-35031820)
[»] chr4 (3 HSPs)
chr4 (251-350)||(10576466-10576565)
chr4 (252-350)||(1676299-1676397)
chr4 (252-350)||(1682827-1682925)


Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 22967595 - 22967944
Alignment:
Q  1 tagtacctagttaggcagtccctaggattccagcatcacccgtggtataagaatgccacattcttacgacgacttaaaccccatcgccaagataccatct 100  Q
    |||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22967595 tagtacctagataggcagtccctaggattccagcattacccgtagtataagaatgccacattcttacgacgacttaaaccccatcgccaagataccatct 22967694  T
Q  101 ttatagtctccgcattttcatccacctcctttgtacggttattaaaaattctatcatttctctccctccaaattgatcaaatcacgatatgccaaactaa 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22967695 ttatagtctccacattttcatccacctcctttgtacggttattaaaaattctatcatttctctccctccaaattgatcaaatcacgatatgccaaactaa 22967794  T
Q  201 ccacataccaagcctgctcattttattcctcaccttatttgtccaacacacaaaacacctatgaagtttcattatttatgatacaagtgaattacactga 300  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22967795 ccacataccaagcctgctcattttattcctcgccttatttgtccaacacacaaaacacctatgaagtttcattatttatgatacaagtgaattacattga 22967894  T
Q  301 cttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    ||||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  22967895 cttgaatgaaaacagtacaatatgttcctcaaaccattcacaactcctct 22967944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 346
Target Start/End: Complemental strand, 18222611 - 18222510
Alignment:
Q  245 aacacacaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaac 344  Q
    ||||| ||||||||||||| | || ||| ||||| |||| |||||||||||| ||||| || | ||| || ||||||||| | | ||||||||| |||||    
T  18222611 aacactcaaaacacctatggatttgcatgatttaggataaaagtgaattacaatgactcgagttaaaacaatacaatatgtttctcaaaccattgacaac 18222512  T
Q  345 tc 346  Q
    ||    
T  18222511 tc 18222510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 350
Target Start/End: Original strand, 17382037 - 17382137
Alignment:
Q  250 acaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctc 349  Q
    |||||||||  || ||||| ||| ||||| |||| ||||||| ||||  || |||| ||||| || ||||||||| ||| ||||||||| ||||||||||    
T  17382037 acaaaacactcataaagttgcatgatttaggataaaagtgaaatacaacgatttgagtgaaaacaatacaatatgttcctcaaaccattgacaactcctc 17382136  T
Q  350 t 350  Q
    |    
T  17382137 t 17382137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 24517467 - 24517367
Alignment:
Q  250 acaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctc 349  Q
    |||||||||||||| |||| ||| ||| | |||| | ||||||||||  |||| |  ||||| || ||||||||| ||| ||||||||| ||||||||||    
T  24517467 acaaaacacctatggagttacatgattaaggataaatgtgaattacaacgactcgggtgaaaacaatacaatatgttcctcaaaccattgacaactcctc 24517368  T
Q  350 t 350  Q
    |    
T  24517367 t 24517367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 25680709 - 25680621
Alignment:
Q  250 acaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccatt 338  Q
    ||||||||||||||||||| ||| |||||  ||| || |||||||||  |||| || ||||| || ||||||||| ||| |||||||||    
T  25680709 acaaaacacctatgaagttgcatgatttagaataaaattgaattacaacgactcgagtgaaaacaatacaatatgttcctcaaaccatt 25680621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 23157792 - 23157890
Alignment:
Q  252 aaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    |||||||||||| | || ||| |||||||||| ||||||||||||  ||||  ||||||| || ||| | | | ||| ||||||||| |||||||||||    
T  23157792 aaaacacctatgcatttgcatgatttatgataaaagtgaattacaacgactcaaatgaaaacaataccaaaagttcctcaaaccattgacaactcctct 23157890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 24841864 - 24841766
Alignment:
Q  252 aaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    |||||||||||| |||| ||| || || |||| |||||| |||||  |||| || ||||| || ||||||||| ||| ||||||||| | |||||||||    
T  24841864 aaaacacctatggagttccatgatctaggataaaagtgacttacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattgaaaactcctct 24841766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 350
Target Start/End: Original strand, 1255210 - 1255315
Alignment:
Q  245 aacacacaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaac 344  Q
    ||||| |||||||||||||||||| ||| ||||| |||| || ||||||||| ||||| || ||||| || |||||| |  ||| ||||||||| |||||    
T  1255210 aacactcaaaacacctatgaagttgcatgatttaggataaaaatgaattacaatgactcgagtgaaaacaatacaatttattcctcaaaccattgacaac 1255309  T
Q  345 tcctct 350  Q
    ||||||    
T  1255310 tcctct 1255315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 12810435 - 12810335
Alignment:
Q  250 acaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctc 349  Q
    |||||||||||| ||| || ||| || || |||| || |||||||||  ||||||||||||| || ||||||||| ||| ||||||||| ||||||||||    
T  12810435 acaaaacacctacgaaattgcatgatctaggataaaaatgaattacaacgacttgaatgaaaacaatacaatatgttcctcaaaccattgacaactcctc 12810336  T
Q  350 t 350  Q
    |    
T  12810335 t 12810335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 344
Target Start/End: Original strand, 18301000 - 18301099
Alignment:
Q  245 aacacacaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaac 344  Q
    ||||| |||||||||||||||||| ||| ||||  |||| |||| |||||||  ||||| || |||| |||||||||||  ||| ||||||||| |||||    
T  18301000 aacactcaaaacacctatgaagttgcatgattttcgataaaagtcaattacaacgactttaaagaaaacagtacaatatattcctcaaaccattgacaac 18301099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 34381820 - 34381721
Alignment:
Q  251 caaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    |||||||||||||||||| | | |||||  ||| ||||||||||||  |||| |||||||| || || |||||| ||  ||||||||| |||||||||||    
T  34381820 caaaacacctatgaagttgcgtgatttagaatagaagtgaattacaacgactcgaatgaaaacaatataatatgttcttcaaaccattaacaactcctct 34381721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 350
Target Start/End: Complemental strand, 30675602 - 30675497
Alignment:
Q  245 aacacacaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaac 344  Q
    ||||| ||||||||||||| |||| ||| || || || | ||||| ||||||  |||| || ||||| || ||||||||| ||| ||||||||| |||||    
T  30675602 aacactcaaaacacctatggagttgcatgatataggacaaaagtgtattacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattgacaac 30675503  T
Q  345 tcctct 350  Q
    ||||||    
T  30675502 tcctct 30675497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 31313664 - 31313595
Alignment:
Q  251 caaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaa 320  Q
    |||||||||||||||||| ||| ||||| |||| ||||||||||||  |||||||| |||| || |||||    
T  31313664 caaaacacctatgaagttgcatgatttaggataaaagtgaattacaacgacttgaacgaaaacaatacaa 31313595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 11769991 - 11770089
Alignment:
Q  245 aacacacaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaa 343  Q
    ||||| ||| ||||| |||||||||||| ||||| |||| ||||||||||||  |||  || ||||| || ||||||||| |||  |||||||| ||||    
T  11769991 aacactcaacacacccatgaagtttcatgatttaggataaaagtgaattacaacgacacgagtgaaaacaatacaatatgttccttaaaccattgacaa 11770089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 27461186 - 27461266
Alignment:
Q  253 aaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaa 333  Q
    |||||||||||||||| ||| ||||| |||| |||||||||| |   |||||||||||| || ||||| ||| ||| ||||    
T  27461186 aaacacctatgaagttgcataatttaggataaaagtgaattataacaacttgaatgaaaacaatacaaaatgttcctcaaa 27461266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 12972387 - 12972486
Alignment:
Q  251 caaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    |||||||| ||||||||| ||| ||||| ||||||| |||||||||  | |||||||||||||| ||||| ||  |||| ||| |||| |||||||||||    
T  12972387 caaaacacgtatgaagttgcatgatttaggatacaactgaattacaacgtcttgaatgaaagcaatacaaaattttccgtaaaacattgacaactcctct 12972486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 30355438 - 30355377
Alignment:
Q  250 acaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaa 311  Q
    ||||||||||||| ||||| ||| |||||||||| |||||||||| |  ||||||| |||||    
T  30355438 acaaaacacctataaagttgcatgatttatgataaaagtgaattaaaacgacttgagtgaaa 30355377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 12956602 - 12956502
Alignment:
Q  250 acaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctc 349  Q
    |||||||||||||  |||| ||| ||||| |||| |||||||||||  ||||| || ||||| || ||||||||  ||| ||||||||| ||||||||||    
T  12956602 acaaaacacctatagagttacatgatttaggataaaagtgaattacgatgactcgagtgaaaacaatacaatattttcctcaaaccattgacaactcctc 12956503  T
Q  350 t 350  Q
    |    
T  12956502 t 12956502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 27097806 - 27097903
Alignment:
Q  253 aaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    |||||||||||||||| ||| |||||||||| || |||||||||  ||||  ||||||| || | ||| ||| ||| ||||||||| |||| ||||||    
T  27097806 aaacacctatgaagttgcatgatttatgataaaactgaattacaacgactcaaatgaaaacaatgcaacatgttcctcaaaccattgacaattcctct 27097903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 350
Target Start/End: Original strand, 14977118 - 14977209
Alignment:
Q  260 tatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaag-cagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    |||| |||| ||| ||||| |||| |||||||||||| ||||| || |||||  || ||||||||| ||| ||||||||| |||||||||||    
T  14977118 tatggagttgcatgatttaggataaaagtgaattacaatgactcgagtgaaaaacaatacaatatgttcctcaaaccattgacaactcctct 14977209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 350
Target Start/End: Original strand, 28901342 - 28901442
Alignment:
Q  250 acaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctc 349  Q
    |||||||| ||| | |||| |||||| || |||| ||  ||||||||  |||| || ||||| || ||||||||| ||| ||||||||| ||||||||||    
T  28901342 acaaaacatctaaggagttgcattatctaggataaaaacgaattacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattgacaactcctc 28901441  T
Q  350 t 350  Q
    |    
T  28901442 t 28901442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 31436591 - 31436531
Alignment:
Q  251 caaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaa 311  Q
    ||||||||||||| |||| ||| ||||| |||| || | ||||||||||||| ||||||||    
T  31436591 caaaacacctatgtagttgcatgatttaggataaaactaaattacactgactcgaatgaaa 31436531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 8402553 - 8402652
Alignment:
Q  251 caaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    ||||||||||||| |||| ||| ||||| |||| || |||||||||  |||| |||||||| || |||||  || ||| ||||||||| |||||||||||    
T  8402553 caaaacacctatggagttgcatgatttaagataaaaatgaattacaacgactcgaatgaaaacaatacaaattgttcctcaaaccattgacaactcctct 8402652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 27415286 - 27415236
Alignment:
Q  245 aacacacaaaacacctatgaagtttcattatttatgatacaagtgaattac 295  Q
    ||||| |||||||||||||||||| ||| ||||| |||| |||||||||||    
T  27415286 aacactcaaaacacctatgaagttgcatgatttacgataaaagtgaattac 27415236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 350
Target Start/End: Original strand, 21505136 - 21505241
Alignment:
Q  245 aacacacaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaac 344  Q
    ||||| ||||||| ||| |||||| ||| ||||| |||| |||| ||||| |  |||| || ||||| || ||||||||||||| ||||||||| |||||    
T  21505136 aacactcaaaacatctaagaagttgcatgatttaggataaaagtaaattataaagactcgagtgaaaacaatacaatatgctcctcaaaccattgacaac 21505235  T
Q  345 tcctct 350  Q
    | ||||    
T  21505236 tactct 21505241  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 21843006 - 21843104
Alignment:
Q  252 aaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    |||||||||||  |||| ||| ||||| |||| |||| ||||||| ||||| |||||||| || ||||| ||| |||  ||||||||  ||||||||||    
T  21843006 aaaacacctatagagttgcatgatttaggataaaagtaaattacaatgactcgaatgaaaacaatacaacatgttcctaaaaccattggcaactcctct 21843104  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 19541149 - 19541052
Alignment:
Q  251 caaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcct 348  Q
    ||||||||||||| |||| ||| ||||| |||| || ||||||||| ||||| || |||||  | ||||| | | ||| ||||||||| |||||||||    
T  19541149 caaaacacctatggagttgcatgatttaggataaaactgaattacaatgactcgattgaaataaatacaaaaagttcctcaaaccattaacaactcct 19541052  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 24047487 - 24047402
Alignment:
Q  258 cctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaa 343  Q
    |||||| |||| ||| ||||| |||| |||||||||||| ||||| |||||||| || ||||| ||| |||  |||||||| ||||    
T  24047487 cctatggagttgcataatttaggataaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttccttaaaccattgacaa 24047402  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 350
Target Start/End: Complemental strand, 35031820 - 35031715
Alignment:
Q  245 aacacacaaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaac 344  Q
    ||||| ||||||||||||| | || ||| || || |||| |||| | |||||  |||| || ||||| || ||||||||| ||| ||||||||| |||||    
T  35031820 aacactcaaaacacctatggaattgcatgatctaggataaaagtaagttacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattaacaac 35031721  T
Q  345 tcctct 350  Q
    ||||||    
T  35031720 tcctct 35031715  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 10576565 - 10576466
Alignment:
Q  251 caaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    ||||||||||||||||||  || |||||  ||| |||||||||||| ||||| |||||||| || ||||| ||| ||  ||||||||  |||||| ||||    
T  10576565 caaaacacctatgaagttgtataatttagaataaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttcttcaaaccatggacaacttctct 10576466  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 1676299 - 1676397
Alignment:
Q  252 aaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    |||||| ||||| |||| ||| || || |||| || |||||||||   ||| |||||||| || ||||||||| ||| ||||||||| |||||||||||    
T  1676299 aaaacaactatggagttgcatgatataggataaaattgaattacaaaaactcgaatgaaaacattacaatatgttcctcaaaccattgacaactcctct 1676397  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 1682827 - 1682925
Alignment:
Q  252 aaaacacctatgaagtttcattatttatgatacaagtgaattacactgacttgaatgaaagcagtacaatatgctccgcaaaccattcacaactcctct 350  Q
    |||||| ||||| |||| ||| || || |||| || |||||||||   ||| |||||||| || ||||||||| ||| ||||||||| |||||||||||    
T  1682827 aaaacaactatggagttgcatgatataggataaaattgaattacaaaaactcgaatgaaaacattacaatatgttcctcaaaccattgacaactcctct 1682925  T

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