View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11580_low_3 (Length: 295)
Name: NF11580_low_3
Description: NF11580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11580_low_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 22137940 - 22138224
Alignment:
| Q |
11 |
gaagaagcaatagaacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtgtgagacaaatactttcacacttccaaattctatag |
110 |
Q |
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| T |
22137940 |
gaagaagcaatagaacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtatgagacaaatactttgacacttccaaattctatag |
22138039 |
T |
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| Q |
111 |
ttaaattacttgttgattggtgcttgaagggtgtacaacaaaagaactatgagaataataagtgccccacctaaagtaaaagtaggactagtccagaact |
210 |
Q |
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| T |
22138040 |
ttaaattacttgttgattggtgcttgaagggtgtacaacaaaagaactatgagaataataagtgccccacctaaagtaaaagtaggactagtccagaact |
22138139 |
T |
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| Q |
211 |
taagatttgatctttctgttctcttgataggatcaacctcttcagaaagtggaaaatctgaacgcctaggattccagctcacata |
295 |
Q |
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| T |
22138140 |
taaggtttgatctttctgttctcttgataggatcaacctcttcagaaagtggaaaatctgaacgcctaggattccagctcacata |
22138224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 40505449 - 40505733
Alignment:
| Q |
11 |
gaagaagcaatagaacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtgtgagacaaatactttcacacttccaaattctatag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
40505449 |
gaagaagcaatagaacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtatgagacaaatactttgacacttccaaattctatag |
40505548 |
T |
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| Q |
111 |
ttaaattacttgttgattggtgcttgaagggtgtacaacaaaagaactatgagaataataagtgccccacctaaagtaaaagtaggactagtccagaact |
210 |
Q |
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| T |
40505549 |
ttaaattacttgttgattggtgcttgaagggtgtacaacaaaagaactatgagaataataagtgccccacctaaagtaaaagtaggactagtccagaact |
40505648 |
T |
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| Q |
211 |
taagatttgatctttctgttctcttgataggatcaacctcttcagaaagtggaaaatctgaacgcctaggattccagctcacata |
295 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505649 |
taaggtttgatctttctgttctcttgataggatcaacctcttcagaaagtggaaaatctgaacgcctaggattccagctcacata |
40505733 |
T |
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