View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11580_low_4 (Length: 290)
Name: NF11580_low_4
Description: NF11580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11580_low_4 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 36156 - 36420
Alignment:
| Q |
12 |
gatggacatcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
111 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36156 |
gatggacatcctccatatgtttgtccaggagtagtaagaagagcttaagcatcaccttcgaatgtcacaaaacttccatgtgattgcaattgtgaagaga |
36255 |
T |
|
| Q |
112 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
36256 |
tgttgaaagacattactggaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtt |
36355 |
T |
|
| Q |
212 |
tatggttctgttggttgtatcttgggcaatgttcatttcatatatgaagatgtagtgtaatgact |
276 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36356 |
tatggttatgttggttgtattttgggcaatgttcatttcatatatgaagatgtagtgtaatgact |
36420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 23573463 - 23573720
Alignment:
| Q |
12 |
gatggacatcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
111 |
Q |
| |
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|||||||||||| |||||||||||||||||| ||||||||||| |||||||||| | ||| |||| ||||| |||| |||||||||||||||||||||| |
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| T |
23573463 |
gatggacatcctgcatatgttcgtccaggaggagtaagaagagctgaagcatcatcatcggatgtaacaaaacttcgatgtgattgcaattgtgaagagc |
23573562 |
T |
|
| Q |
112 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
211 |
Q |
| |
|
|| |||||||||||||| ||||||| || ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||| |
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|
| T |
23573563 |
tgctgaaagacattactggaataatcaacgaattcggaatcaacaaaaatgacaagttaaagaagaaactccaatactcaagaaagaaggcaaatttgtt |
23573662 |
T |
|
| Q |
212 |
tatggttctgttggttgtatcttgggcaatgttcatttcatatatgaagatgtagtgt |
269 |
Q |
| |
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|||| || ||||||||||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
23573663 |
tatgtttacattggttgtatcttgggcaatgttcattacatatctgacgatgtagtgt |
23573720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 236
Target Start/End: Complemental strand, 31815098 - 31814943
Alignment:
| Q |
81 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | |||| || ||||| |||||||| |||||||||| |
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|
| T |
31815098 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaacgaagaaaaacgagaagttgaagaagaagc |
31814999 |
T |
|
| Q |
181 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
236 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
|
|
| T |
31814998 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
31814943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 13507850 - 13507638
Alignment:
| Q |
12 |
gatggacatcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
111 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
13507850 |
gatggacatcctctatatgttcgtccagtagcggtaagaagagttgaagcatcacctttgactgtcacaaagcttccatgtgattgcaattgtgaagaga |
13507751 |
T |
|
| Q |
112 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
211 |
Q |
| |
|
|| |||| |||||||| ||||||||||||| || |||| |||||||| |||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |
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|
| T |
13507750 |
tgccgaaaaacattactggaataatgaaggatttcagaataaacaaaaacgagaagctaaagaagaagctccaatactcaaggaagaaggcaaatttgtt |
13507651 |
T |
|
| Q |
212 |
tatggttctgttg |
224 |
Q |
| |
|
|||| || ||||| |
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|
| T |
13507650 |
tatgattttgttg |
13507638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 13507399 - 13507611
Alignment:
| Q |
12 |
gatggacatcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
111 |
Q |
| |
|
|||||||||||||| |||||||||| || || ||||||| || ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
13507399 |
gatggacatcctccgtatgttcgtctagtagcggtaagaatagctgaagcatcaccttcgacggtcacaaagcttccacgtgattgcaattgtgaagaga |
13507498 |
T |
|
| Q |
112 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
211 |
Q |
| |
|
|| |||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||||||||| |||| ||||| ||| | ||||||||||| |
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|
| T |
13507499 |
tgctgaaagacattactcaaataatgaaggatttcaaaatcaacaaaaacgagaagttaaagaagaagctctaatactcaaggaagaatgcaaatttgtt |
13507598 |
T |
|
| Q |
212 |
tatggttctgttg |
224 |
Q |
| |
|
||||||| ||||| |
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| T |
13507599 |
tatggttttgttg |
13507611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 7799543 - 7799387
Alignment:
| Q |
81 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
7799543 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttgactgtgatattgaaagatttgggaatcaagaaaaatgagaagttgaagaagaagc |
7799444 |
T |
|
| Q |
181 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
237 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
7799443 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
7799387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 19398644 - 19398488
Alignment:
| Q |
81 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| ||||||||||| || |||||||||| |
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|
| T |
19398644 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttaactgtgatattgaaagatttgggaatcaagaaaaatgagaatttgaagaagaagc |
19398545 |
T |
|
| Q |
181 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
237 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
19398544 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
19398488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 3585 - 3429
Alignment:
| Q |
81 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
3585 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
3486 |
T |
|
| Q |
181 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
237 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
3485 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
3429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 236
Target Start/End: Complemental strand, 22059491 - 22059336
Alignment:
| Q |
81 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
22059491 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
22059392 |
T |
|
| Q |
181 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
236 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
|
|
| T |
22059391 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
22059336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 51253217 - 51253252
Alignment:
| Q |
75 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
51253217 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
51253252 |
T |
|
Back To:
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