View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11580_low_6 (Length: 243)
Name: NF11580_low_6
Description: NF11580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11580_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 25027626 - 25027852
Alignment:
| Q |
17 |
caaggagaacctaagtttatttataggctaagagagctactacattcatgctaaactcagtatttatatattaaagagtgcaagtgcacaataatcattt |
116 |
Q |
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| T |
25027626 |
caaggagatcctaagtttatttataggctaagagagctactacattcatgctaaactctgtatttacatattaaagagtgcaagtgcacaaaaatcattt |
25027725 |
T |
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| Q |
117 |
aggtttcacaaagaaaaaccacagcaaaattgaattcacttagctgttacggccgtattcttaagtcatgacttccacaataagtcttaattctttgggc |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25027726 |
aggtttcacaaagaaaaaccacaacaaaattgaattcacttagctgttacggccgtattcttaagtcatgacttccacaataagtcttagttctttgggc |
25027825 |
T |
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| Q |
217 |
gattttggcccattttgcacctatgct |
243 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
25027826 |
gattttggcccattttgcaccaatgct |
25027852 |
T |
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