View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11580_low_8 (Length: 240)
Name: NF11580_low_8
Description: NF11580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11580_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6224571 - 6224350
Alignment:
| Q |
1 |
caaacatcgtatatttgttggaattgaaaacttgttttacttatgtgtggtccattatttatttttaagctttgttgttgacttggattatgataatctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6224571 |
caaacatcgtatatttgttggaattgaaaacttgttttacttatgtgtggtccattatttatttttaagctttgttgttgacttggattatgataatctc |
6224472 |
T |
|
| Q |
101 |
atttggtgaatatgaactatggggaaaacacatactgtagtgggttaatgctaagggtgaacgcttcgtggcttgcaatgagtgtgtctttcaacttaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6224471 |
atttggtgaatatgaactatggggaaaacacataccgtcgggggttaatgctaagggtgaacgcttcgtggcttgcaatgagtgtatctttcaacttaat |
6224372 |
T |
|
| Q |
201 |
ttgtagaaactcttattgagtg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6224371 |
ttgtagaaactcttattgagtg |
6224350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 28247645 - 28247725
Alignment:
| Q |
142 |
gggttaatgctaagggtgaacgcttcgtggcttgcaatgagtgtgtctttcaacttaatttgtagaaactcttattgagtgt |
223 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28247645 |
gggttaatgctaagggtga-cgctttgtggcttgcaatgagtgtgtctttcaacttaatttgtagaaactcttattgagtgt |
28247725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 28247394 - 28247455
Alignment:
| Q |
58 |
tttatttttaagctttgttgttgacttggattatgataatctcatttggtgaatatgaacta |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28247394 |
tttatttttaagcttttttgttgacttggactatgataatctcatttggtgaatatgaacta |
28247455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 18309055 - 18308968
Alignment:
| Q |
123 |
ggaaaacacatactgtagtgggttaatgctaagggtgaacgcttcgtggcttgcaatgagtgtgtctttcaacttaatttgtagaaac |
210 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18309055 |
ggaaaacacatactgtagggggttaatgctaagggtgcacgctttctcgcttgcaatgagtgtgtctttcaacttaatttgtagaaac |
18308968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19748528 - 19748475
Alignment:
| Q |
1 |
caaacatcgtatatttgttggaattgaaaacttgttttacttatgtgtggtcca |
54 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19748528 |
caaacatcatatatttgttggaattgaaaacttgttttacttatgtgtggtcca |
19748475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 54182006 - 54181943
Alignment:
| Q |
1 |
caaacatcgtatatttgttggaattgaaaacttgttttacttatgtgtggtccattatttattt |
64 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
54182006 |
caaacatcatatgtttgttggaattgaaaacttgttttacgtatgtgtggtccaatatttattt |
54181943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 24631254 - 24631355
Alignment:
| Q |
115 |
aactatggggaaaacacatactgtagtgggttaatgctaagggtgaacgcttcgtggcttgcaatgagtgtgtctttcaacttaatttgtagaaactctt |
214 |
Q |
| |
|
||||||| |||||| || || ||||| ||||||||| ||||| ||| | ||| |||||| | |||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
24631254 |
aactatgcggaaaagacgtagtgtagggggttaatgttaaggatgacccctttgtggctcgtaatgagtgtgtctttccagttaatttgtagaaaatctt |
24631353 |
T |
|
| Q |
215 |
at |
216 |
Q |
| |
|
|| |
|
|
| T |
24631354 |
at |
24631355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 37743878 - 37743939
Alignment:
| Q |
58 |
tttatttttaagctttgttgttgacttggattatgataatctcatttggtgaatatgaacta |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||||||||||||||| || |||||||| |
|
|
| T |
37743878 |
tttatttttaagcttttttgttgacttgaactatgataatctcatttggtaaacatgaacta |
37743939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 31571822 - 31571784
Alignment:
| Q |
178 |
atgagtgtgtctttcaacttaatttgtagaaactcttat |
216 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
31571822 |
atgagtgtctctttcaacttaatttatagaaactcttat |
31571784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University