View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11581_high_11 (Length: 508)
Name: NF11581_high_11
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 46279222 - 46278739
Alignment:
| Q |
19 |
atcatcacctcctcctttttgtgtcagtcaggctcagaataaaatgcattatgcattgctgtgttatttctttgctttcctttttggaatgttatgtggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46279222 |
atcatcacctcctcctttttgtgtcagtcaggctcagaataaaatgcattatgcattgctgtgttatttctttgctttcctttttggaatgttatgtggt |
46279123 |
T |
|
| Q |
119 |
gaggtatcttcagaattttggaaacaatatttcataaatattgttgtgtgtgtatgtcatctctatttaaagtgttgccactttcttgtttgtttctgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46279122 |
gaggtatcttcagaattttggaaacaatatttcataaatattgttgtgtgtgtatgtcatctctatttaaagtgttgccactttcttgtttgtttctgtt |
46279023 |
T |
|
| Q |
219 |
ctgagttctgaccttgaaattggtacaagtttacaatttatatatgtgtctcttgtaaggggtatttttaattgatgataaagaaaaataactgattgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46279022 |
ctgagttctgaccttgaaattggtacaagtttacaatttatatatgtgtctcttgtaaggggtatttttaattgatgataaagaaaaataactgattgat |
46278923 |
T |
|
| Q |
319 |
ttttctccctatctggtgaatatatgcagtaattagttatatatcattacattttagttttgaaatggaattgaggtgtgttcaatttaatgctgctgct |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46278922 |
ttttctccctatctggtgaatatatgcagtaattagttatatatcattacattttagttttgaaatggagttgaggtgtgttcaatttaatgctgctgct |
46278823 |
T |
|
| Q |
419 |
attgatgtcatatccatttacataacagtgttcctgatcctacctgacatatttccacatgctgtagttgttttttcttctctc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46278822 |
attgatgtcatatccatttacataacagtgttcctgatcctacctgacatatttccacatgctgtagttgttttttcttctctc |
46278739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University