View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_high_14 (Length: 475)
Name: NF11581_high_14
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 44802198 - 44801741
Alignment:
| Q |
1 |
tcaaagtttaatttcattaattaattaatgtagcgaactttagcatttccagtcttagtattgacgagttactggaatataatgggatcataaattatct |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44802198 |
tcaaagtttaatttcattaattaatgt---tagcgaactttagcatttccagtcttagtattgacgagttactggaatataatgggatcataaattatct |
44802102 |
T |
|
| Q |
101 |
tacaaagttaaccgccattgatacttggttgcaaatatcaccaagaccaggtgcccagccttatcctgaacttcattctgatgcttcgccaagctctttc |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44802101 |
taaaaagttaaccgccattgatacttggttgcaaatatcacgaagaccaggtgcccagccttatcctgaacttcattctgatgcttcgccaagctctttc |
44802002 |
T |
|
| Q |
201 |
atccatttgatatacaaatcacttcacttataaattgctcaacacctacaccttcattataaaacttcttactcaaattcataccccatcaaatcacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44802001 |
atccatttgatatacaaatcacttcacttataaattgctcaacacctacaccttcattataaaacttcttactcaaattcataccccatcaaatcacttt |
44801902 |
T |
|
| Q |
301 |
caaatatgtgttagtcgattcatctaacatgttcaaattcaaattaactccactaaattatgtatgtgtgtcgcataaaatgaatgagaatnnnnnnnta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
44801901 |
caaatatgtgttagtcgattcatctaacatgttcaaattcaaattaactccactaaattatgtat--gtgtcgcataaaatgaatgagaataaaaaaata |
44801804 |
T |
|
| Q |
401 |
gtatatgttgaaacaaaaattgtcgctagaataactataagcttaacaaaatcaaaatcatta |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44801803 |
gtatatgttgaaacaaaaattgtcgctagaataactataagcttaacaaaatcaaaatcatta |
44801741 |
T |
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