View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_high_15 (Length: 470)
Name: NF11581_high_15
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 41421532 - 41421081
Alignment:
| Q |
1 |
actctataaatatttccatccatatacatgtgttttgataaagtgggaagtgattatggtttggtttaagtgaaattgagtaatatatacttctgctatg |
100 |
Q |
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| T |
41421532 |
actctagaaatctttccatccatatgcatgtgttttgataaagtgggaagtgattatggtttggtttaagtgaaattgagtaatatat--ttctactatg |
41421435 |
T |
|
| Q |
101 |
tttagagaaataacatcatgtcgatatggtagtgtataactttttaattacttggattttatcgaggaagaaggaagttacatccatactttccgacacg |
200 |
Q |
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| T |
41421434 |
tttagagaaataacatcacgtcgatatggtagtgtataactttttaattacttggattttatcgaggaagaaggaagttacatccatactttccgacacg |
41421335 |
T |
|
| Q |
201 |
atcaattcaatacttttaatttgttaaaattcattactatattaataaacccatattaggactaacaatggttatccatggacaaaaatattatgatatt |
300 |
Q |
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| T |
41421334 |
atcaattcaatacttttaatctgttaaaattcattactagattaataaacccatattaggactaacaatggttatccatggacacaaatattatgatatt |
41421235 |
T |
|
| Q |
301 |
catgtttatcacgttggttaaatatgatatttgtaaatattgcataattccgtggataaactacaaacttttacataaatccatgacatatattctttta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41421234 |
catgtttatcacgttggttaaatatgatatttgtaaatattgcataactccgtggataaactacaaacttttacataaatccatgatatatattctttta |
41421135 |
T |
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| Q |
401 |
aacaaatttcttcatgtctccaccaactttacaaaaatccatggacgttgttga |
454 |
Q |
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| T |
41421134 |
aacaaatttcttcatgtctccaccaactttacaaaaatacatggacgttgttga |
41421081 |
T |
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