View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11581_high_19 (Length: 428)
Name: NF11581_high_19
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_19 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 12333622 - 12333203
Alignment:
| Q |
1 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12333622 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
12333523 |
T |
|
| Q |
101 |
ttagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct-nnnnnnnntaaatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12333522 |
ttagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatctaaaaaaaaataaatc |
12333423 |
T |
|
| Q |
200 |
agagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcnnnnnnn |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12333422 |
agagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcaaaaaaa |
12333323 |
T |
|
| Q |
300 |
nntgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12333322 |
aatgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaa |
12333223 |
T |
|
| Q |
400 |
tattgctacctatgctactc |
419 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
12333222 |
tattgctacctatactactc |
12333203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 6951113 - 6951532
Alignment:
| Q |
1 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6951113 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagttttatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
6951212 |
T |
|
| Q |
101 |
ttagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct-nnnnnnnntaaatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6951213 |
ttagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatctaaaaaaaaataaatc |
6951312 |
T |
|
| Q |
200 |
agagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcnnnnnnn |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6951313 |
agagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcaaaaaaa |
6951412 |
T |
|
| Q |
300 |
nntgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6951413 |
aatgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaa |
6951512 |
T |
|
| Q |
400 |
tattgctacctatgctactc |
419 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
6951513 |
tattgctacctatactactc |
6951532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 18186976 - 18186557
Alignment:
| Q |
1 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18186976 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
18186877 |
T |
|
| Q |
101 |
ttagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct-nnnnnnnntaaatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18186876 |
ttagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatctaaaaaaaaataaatc |
18186777 |
T |
|
| Q |
200 |
agagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcnnnnnnn |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18186776 |
agagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcaaaaaaa |
18186677 |
T |
|
| Q |
300 |
nntgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18186676 |
aatgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaa |
18186577 |
T |
|
| Q |
400 |
tattgctacctatgctactc |
419 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
18186576 |
tattgctacctatactactc |
18186557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 32097895 - 32097845
Alignment:
| Q |
47 |
catttcctatttgatatttttatttaagtgggttgatagagagtccattta |
97 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32097895 |
catttcctatttgatatttttatttaagtaggttgatagagagtccattta |
32097845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 13241953 - 13242372
Alignment:
| Q |
1 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13241953 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
13242052 |
T |
|
| Q |
101 |
ttagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct-nnnnnnnntaaatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13242053 |
ttagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatctaaaaaaaaataaatc |
13242152 |
T |
|
| Q |
200 |
agagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcnnnnnnn |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13242153 |
agagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcaaaaaaa |
13242252 |
T |
|
| Q |
300 |
nntgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13242253 |
aatgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaa |
13242352 |
T |
|
| Q |
400 |
tattgctacctatgctactc |
419 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
13242353 |
tattgctacctatactactc |
13242372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 54835363 - 54835547
Alignment:
| Q |
1 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54835363 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
54835462 |
T |
|
| Q |
101 |
ttagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54835463 |
ttagttgatccaggccaaaagcagacctacgtcaggataaccttcttctttgaaaaactttggtagtgctcttagattaaaatct |
54835547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 31898036 - 31898104
Alignment:
| Q |
201 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
269 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31898036 |
gagcacagggagtcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
31898104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 31913745 - 31913813
Alignment:
| Q |
201 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
269 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31913745 |
gagcacagggagtcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
31913813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 31947393 - 31947461
Alignment:
| Q |
201 |
gagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
269 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31947393 |
gagcacagggagtcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctat |
31947461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29007098 - 29007060
Alignment:
| Q |
1 |
attctcttttcttcctatcttatgaactttaaggtgtat |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007098 |
attctcttttcttcctatcttatgaactttaaggtgtat |
29007060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 39507280 - 39507414
Alignment:
| Q |
1 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39507280 |
attctcttttcttcctatcttatgaactttaaggtgtatgaagtttcatttcctatttgatatttttatttaagtgggttgatagagagtccatttaact |
39507379 |
T |
|
| Q |
101 |
ttagttgatccaggccaaaagcagacctacgtcag |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39507380 |
ttagttgatccaggccaaaagcagacctacgtcag |
39507414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 194 - 412
Target Start/End: Original strand, 39507422 - 39507653
Alignment:
| Q |
194 |
taaatcagagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgc- |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39507422 |
taaatcagagcacagggaatcatttcctttttctttgtgtaaagaaaaaagatggtaaactaattgatatttctatcggttaatgaaaaagcccaatgca |
39507521 |
T |
|
| Q |
293 |
------------nnnnnnnnntgcacgttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtctacggtt |
380 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
39507522 |
aaaaaaaaaaaaaaaaaaaaatgcatgttgggtttttaaaacaattcaaatcattttgataataatagtttaatctattttaccgagaagctctacggtt |
39507621 |
T |
|
| Q |
381 |
cgagtccgtatagccctaatattgctacctat |
412 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
39507622 |
cgagtccgtatagccataatattgctacctat |
39507653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 232 - 402
Target Start/End: Complemental strand, 251011 - 250843
Alignment:
| Q |
232 |
gtaaagaaaaaagatggtagactaattgatatttctatcagttaatgaaaaagcccaatgcnnnnnnnnntgcacgttgggtttttaaaacaattcaaat |
331 |
Q |
| |
|
||||||||||| ||||| |||||| |||| ||| ||||||| |||||| |||||||||| |||| ||||||| ||| ||||| ||||||| |
|
|
| T |
251011 |
gtaaagaaaaactatggtggactaactgatctttaaatcagtttatgaaagagcccaatgcaaaaaaa--tgcatgttgggtctttgaaacagttcaaat |
250914 |
T |
|
| Q |
332 |
cattttgataataatagtttgatctgttttaccgagaaggtctacggttcgagtccgtatagccctaatat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
250913 |
cattttgataataatagtttgatctgttttaccgagaaggtctacggttcgaatccgtatagccctaatat |
250843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 42762710 - 42762777
Alignment:
| Q |
308 |
ttgggtttttaaaacaattcaaatcattttgataataatagtttgatctgttttaccgagaaggtcta |
375 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||| ||||| |
|
|
| T |
42762710 |
ttggatttttaaaacaattcaaatcattttgataataataattttatttgttttacctagaaagtcta |
42762777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 1132401 - 1132369
Alignment:
| Q |
352 |
gatctgttttaccgagaaggtctacggttcgag |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1132401 |
gatctgttttaccgagaaggtctacggttcgag |
1132369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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