View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_high_20 (Length: 406)
Name: NF11581_high_20
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 388
Target Start/End: Complemental strand, 30321644 - 30321266
Alignment:
| Q |
9 |
aatgagttaatgtagtgcttttgttcacataaacacaatagtgtgaggtccacactaatttcccttgtttttattactttttacaggaacagtaaatgat |
108 |
Q |
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| T |
30321644 |
aatgagttaatgtagtgtttttgttcacataaacacaatagtgtgaggtccacactaatttcccttgtttttattactttttacaggaacagtaaatgat |
30321545 |
T |
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| Q |
109 |
actaacaagataaaacaattacattttttgttgttgatataaatataaattttaattgacgtgttctggtaattactttaatcagtgtaaaaatatctaa |
208 |
Q |
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| T |
30321544 |
actaacaagataaaacaattacattttttgttgttgatataaatagaaattttaattgacgtgttctggtaattactttaatcagtgtaaaaatatctaa |
30321445 |
T |
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| Q |
209 |
gatttnnnnnnnnnnnnnnnnnntatctttcacacattttactctcttggatttaatcctttctagtctatatctattctctttgataaaattttagctc |
308 |
Q |
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| T |
30321444 |
gattt-aaaaaataaacaaaaaatatctctcacacattttactctcttggatttaatcctttctagtctatatctattctctttgataaaattttagctc |
30321346 |
T |
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| Q |
309 |
taaattaatttatggatcaaatttatcaaaattcaatcttttaagaatctaaactaagattttgttagagagacaatagg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30321345 |
taaattaatttatggatcaaatttatcaaaattcaatcttttaataatctaaactaagattttgttagagagacaatagg |
30321266 |
T |
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