View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_high_24 (Length: 374)
Name: NF11581_high_24
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 41347117 - 41346764
Alignment:
| Q |
10 |
agatgaatgcaaaaataacctgtgtaaggctagtcaagattttcaagatgtccgcatttttcattcctatgctccttaggaaatttattcttggaagcaa |
109 |
Q |
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| T |
41347117 |
agatgaatgcaaaaataacctgtgtaaggctagtcaagattttcaagatgtccgcatttttcattcctatgctccttaggaaatttattcttggaagcaa |
41347018 |
T |
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| Q |
110 |
tccatcatcaatactgtaatgcagaagctgagggtgtttcgtcaccatcttcacaatgctctctttgggtgcatccaactctttgttaagaaacatcaat |
209 |
Q |
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| T |
41347017 |
tccatcatcaatactgtaatgcaaaagctgagggtgtttcgtcaccatcttcacaatgctctctttgggtgcatccaactctttgttaagaaacatcaat |
41346918 |
T |
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| Q |
210 |
cgagtattccatgaaatgtcaatacgttggacaagaatttgaggactcagttgaatgactttacccaaatctttttccttgatgccaacttcctcaatta |
309 |
Q |
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| T |
41346917 |
cgagtattccatgaaatgtcaatacgttggacaagaatttgaggactcagttgaatgactttacccaaatctttttccttgatgccaacttcctcaatta |
41346818 |
T |
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| Q |
310 |
aatatcttaccgttggttttaaagatttctcaacactgtaagaaaaaagtgatg |
363 |
Q |
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| T |
41346817 |
aatatcttaccgttggttttaaagatttctcaacactgtaagaaaaaagggatg |
41346764 |
T |
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