View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11581_high_26 (Length: 345)

Name: NF11581_high_26
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11581_high_26
NF11581_high_26
[»] chr2 (3 HSPs)
chr2 (169-345)||(18805936-18806112)
chr2 (12-124)||(18807093-18807205)
chr2 (11-86)||(14463055-14463130)
[»] chr8 (1 HSPs)
chr8 (45-145)||(33468171-33468271)
[»] chr7 (2 HSPs)
chr7 (53-146)||(6066693-6066786)
chr7 (100-149)||(6650403-6650452)
[»] chr4 (2 HSPs)
chr4 (25-146)||(15994089-15994210)
chr4 (214-345)||(4598411-4598542)
[»] scaffold0495 (1 HSPs)
scaffold0495 (67-146)||(7997-8075)
[»] chr6 (1 HSPs)
chr6 (67-146)||(10231274-10231352)
[»] scaffold0001 (1 HSPs)
scaffold0001 (67-146)||(67535-67614)
[»] chr3 (1 HSPs)
chr3 (105-147)||(21396331-21396373)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 169 - 345
Target Start/End: Complemental strand, 18806112 - 18805936
Alignment:
Q  169 ataccgtataatttataccatacaatatttagataagtgttgattaagaaaaccaattaaagattaaagttgctcttgattaacgaccaagctcgtataa 268  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18806112 atacggtataatttataccatacaatatttagataagtgttgattaagaaaaccaattaaagattaaagttgctcttgattaacgaccaagctcgtataa 18806013  T
Q  269 tattattgatgatcacaatgacatgcatcaagctccctctctaaggtttctcatgaaacttcctaaaccaacgggca 345  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18806012 tattattggtgatcacaatgacatacatcaagctccctctctaaggtttctcaagaaacttcctaaaccaacgggca 18805936  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 18807205 - 18807093
Alignment:
Q  12 acagacatactattacacagtaaccgaaagaacataaaaatttatgttaccgtccgaaagtataacaaaggactcgctctccaaaccatgtactcaaaat 111  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  18807205 acagacatactattacacagtagccgaaaaaacataaaaatttatgttaccgtctgaaagcataacaaaggactcgctctccaaaccatgtactcaaaat 18807106  T
Q  112 cgaaaaggacata 124  Q
    |||||||||||||    
T  18807105 cgaaaaggacata 18807093  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 14463130 - 14463055
Alignment:
Q  11 cacagacatactattacacagtaaccgaaagaacataaaaatttatgttaccgtccgaaagtataacaaaggactc 86  Q
    ||||||||| ||| ||||||||| ||||||||| ||||||| ||||||||| |   ||||| ||||||||||||||    
T  14463130 cacagacatgctactacacagtagccgaaagaaaataaaaaattatgttacagcttgaaagcataacaaaggactc 14463055  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 33468171 - 33468271
Alignment:
Q  45 ataaaaatttatgttaccgtccgaaagtataacaaaggactcgctctccaaaccatgtactcaaaatcgaaaaggacataatacgattttaaccaccaat 144  Q
    ||||||| | ||||||| | | ||||| ||||||||||||||  |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  33468171 ataaaaaatcatgttacagcctgaaagcataacaaaggactcaatctctaaatcatgtactcaaaatcgaaaagggcataatacgattttaaccaccaat 33468270  T
Q  145 a 145  Q
    |    
T  33468271 a 33468271  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 6066693 - 6066786
Alignment:
Q  53 ttatgttaccgtccgaaagtataacaaaggactcgctctccaaaccatgtactcaaaatcgaaaaggacataatacgattttaaccaccaataa 146  Q
    ||||||||| | | ||||| | ||||||||| ||  |||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  6066693 ttatgttacagcctgaaagcacaacaaaggagtcaatctccaaaccgtgtactccaaatcgaaaaggacataatacgattttagccaccaataa 6066786  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 6650403 - 6650452
Alignment:
Q  100 tgtactcaaaatcgaaaaggacataatacgattttaaccaccaataaact 149  Q
    |||| ||||||| |||||||||||| || |||||||||||||||||||||    
T  6650403 tgtattcaaaattgaaaaggacatagtatgattttaaccaccaataaact 6650452  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 15994210 - 15994089
Alignment:
Q  25 tacacagtaaccgaaagaacataaaaatttatgttaccgtccgaaagtataacaaaggactcgctctccaaaccatgtactcaaaatcgaaaaggacata 124  Q
    |||| |||| ||||||||| |||||||||||||||||  |  ||||  |||||||| | |||  ||||||||||||||| ||||||||||||| | ||||    
T  15994210 tacagagtagccgaaagaaaataaaaatttatgttacaatttgaaaacataacaaaaggctcaatctccaaaccatgtaatcaaaatcgaaaaagtcata 15994111  T
Q  125 atacgattttaaccaccaataa 146  Q
     |||||||||| ||||||||||    
T  15994110 ttacgattttagccaccaataa 15994089  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 345
Target Start/End: Original strand, 4598411 - 4598542
Alignment:
Q  214 aagaaaaccaattaaagattaaagttgctcttgattaacgaccaagctcgtataatattattgatgatcacaatgacatgcatcaagctccctctctaag 313  Q
    ||||||||||||  ||||||| |||| ||||||||||| |||||| ||| |||  | |||||| || |||  || |||| ||||||||||    ||| ||    
T  4598411 aagaaaaccaatgcaagattatagtttctcttgattaatgaccaaactcatattgttttattggtggtcatgattacatacatcaagctctaattctgag 4598510  T
Q  314 gtttctcatgaaacttcctaaaccaacgggca 345  Q
    |||| ||| |||| ||||||||||||||||||    
T  4598511 gtttttcaagaaatttcctaaaccaacgggca 4598542  T

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Target: scaffold0495 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 8075 - 7997
Alignment:
Q  67 gaaagtataacaaaggactcgctctccaaaccatgtactcaaaatcgaaaaggacataatacgattttaaccaccaataa 146  Q
    ||||| ||||||||||||||  |||||||||| |||| ||||||||| ||||| ||||||||||||||| ||||||||||    
T  8075 gaaagcataacaaaggactcaatctccaaaccgtgtagtcaaaatcg-aaagggcataatacgattttagccaccaataa 7997  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 10231352 - 10231274
Alignment:
Q  67 gaaagtataacaaaggactcgctctccaaaccatgtactcaaaatcgaaaaggacataatacgattttaaccaccaataa 146  Q
    ||||| ||||||||||||||  |||||||||| |||| ||||||||| ||||| ||||||||||||||| ||||||||||    
T  10231352 gaaagcataacaaaggactcaatctccaaaccgtgtagtcaaaatcg-aaagggcataatacgattttagccaccaataa 10231274  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 67535 - 67614
Alignment:
Q  67 gaaagtataacaaaggactcgctctccaaaccatgtactcaaaatcgaaaaggacataatacgattttaaccaccaataa 146  Q
    ||||| |||||||| ||||   ||| ||||||||||| ||||||||||||||  ||||||| ||||||| ||||||||||    
T  67535 gaaagcataacaaaagacttaatcttcaaaccatgtattcaaaatcgaaaagatcataataagattttagccaccaataa 67614  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 21396331 - 21396373
Alignment:
Q  105 tcaaaatcgaaaaggacataatacgattttaaccaccaataaa 147  Q
    ||||||||||| | || ||||||||||||||||||||||||||    
T  21396331 tcaaaatcgaacaagatataatacgattttaaccaccaataaa 21396373  T

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