View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_high_27 (Length: 339)
Name: NF11581_high_27
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 14305560 - 14305792
Alignment:
| Q |
21 |
aggtaaaagggtgcatgaaggagaagttagccatgcagaagtggaagaagacatggctataagattatggaatgataattgttaaggtatcatgttattt |
120 |
Q |
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| T |
14305560 |
aggtaaaagggtgcatgaaggagaagttagccatgcagaagtagaagaagacatggctataagattatggaatgataattgttaaggtttcatattattt |
14305659 |
T |
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| Q |
121 |
gttagaaaatatgtaatgagtttgttgcagaaagtatgagagacagagcatgtaattgtaaaagacagacccccacaactataaattaccacgcgttgcg |
220 |
Q |
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| T |
14305660 |
gttagaaaatatgtaatgagtttgttgcagaaagtatgagagacagagcatgtaattgtataagacagacccccacaactataaattaccacgcgttgcg |
14305759 |
T |
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| Q |
221 |
cgagtttcacgatgtctcccactagatcctcac |
253 |
Q |
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| T |
14305760 |
cgagtttcacgatgtctcccactagatcctcac |
14305792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 14283800 - 14283856
Alignment:
| Q |
19 |
ataggtaaaagggtgcatgaaggagaagttagccatgcagaagtggaagaagacatg |
75 |
Q |
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| T |
14283800 |
ataggtaaaagggtgcatgaaggagaagttagccatgcagaagaagaagaagacatg |
14283856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 14271012 - 14271078
Alignment:
| Q |
19 |
ataggtaaaagggtgcatgaaggagaagttagccatgcagaagtggaagaagacatggctataagattat |
88 |
Q |
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| T |
14271012 |
ataggtaaaagggtgcatgaaggagaagttagccatgatgaagt---agaagacatggttaaaagattat |
14271078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 14321951 - 14321992
Alignment:
| Q |
21 |
aggtaaaagggtgcatgaaggagaagttagccatgcagaagt |
62 |
Q |
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| T |
14321951 |
aggtaaaagggtgcatgaaggagaagttagccatgaagaagt |
14321992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 25886619 - 25886673
Alignment:
| Q |
19 |
ataggtaaaagggtgcatgaaggagaagttagccatgcagaagtggaagaagacatgg |
76 |
Q |
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| T |
25886619 |
ataggtaaaagggtgcatgaaggagaagttagccatgaagaa---gaagaagacatgg |
25886673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 44350468 - 44350509
Alignment:
| Q |
20 |
taggtaaaagggtgcatgaaggagaagttagccatgcagaag |
61 |
Q |
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| T |
44350468 |
taggtaaaagggtgcatgaaggagaagttagccatgaagaag |
44350509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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