View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_high_28 (Length: 335)
Name: NF11581_high_28
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 53037674 - 53037369
Alignment:
| Q |
19 |
cttgaaacttagtcaaatcctcttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037674 |
cttgaaacttagtcaaatcctcttgcttcttaaaatactcgattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttga |
53037575 |
T |
|
| Q |
119 |
agcataccctaaaggcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037574 |
agcataccctaaaggcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctcc |
53037475 |
T |
|
| Q |
219 |
acacgattcctccaatcaacacaaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaagg |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037474 |
acacgattcctccaatcaacacaaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaagg |
53037375 |
T |
|
| Q |
319 |
tttcat |
324 |
Q |
| |
|
|||||| |
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|
| T |
53037374 |
tttcat |
53037369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 39995918 - 39996223
Alignment:
| Q |
19 |
cttgaaacttagtcaaatcctcttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttga |
118 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||||| | |||| || | ||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
39995918 |
cttggaacttagtcaaatcttcttgcttcttaaagtactcattccccaacctaatatactcatcgttcactttctcaaccgcttcccttatcctacttga |
39996017 |
T |
|
| Q |
119 |
agcataccctaaaggcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctcc |
218 |
Q |
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|
|||||||||||| || ||||| |||||||| ||||| ||||||||||||| |||||| ||| | ||||||||||||||||||| ||||||||||| ||| |
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| T |
39996018 |
agcataccctaagggtttagacattaaatcacctgctagactagtagccaaaacatctaaaatggcattcccaaaataccctttaggtaaattaggttcc |
39996117 |
T |
|
| Q |
219 |
acacgattcctccaatcaacacaaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaagg |
318 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||| ||||||||||| |||| |||| ||||||| |||||||||||||| ||||||||||| | |
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| T |
39996118 |
acacgacgcctccaatcaacacaaacaccaagcgcggttggttggtcatttttatgctctcttgctttacatgcacttctccaaatatgaccggttactg |
39996217 |
T |
|
| Q |
319 |
tttcat |
324 |
Q |
| |
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|||||| |
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|
| T |
39996218 |
tttcat |
39996223 |
T |
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