View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_high_30 (Length: 323)
Name: NF11581_high_30
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 32 - 304
Target Start/End: Original strand, 3544121 - 3544393
Alignment:
| Q |
32 |
ggtgatcgaaatataagaccctactaaagatggttagattggttttgtagtgaaaataatcattcacaatgttggtagatatttggaaccaataacatgt |
131 |
Q |
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| T |
3544121 |
ggtgatcgaaatataagaccctactaaagatggttagattgattctgtactgaaaataatcattcacaatgttggtagatattttgaaccaataatatgc |
3544220 |
T |
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| Q |
132 |
ttttnnnnnnntatctaaaatcttacaatatttgacatctgattttaggtatttggaagagccaaacaaagcaatcaaatgggcatcaacaaagctcacg |
231 |
Q |
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| T |
3544221 |
ttttgaaaaaatatctaaaatcttacaatatttgacatctgattttaggtatttggaagagccaaacaaagcaatcaaatgggcatcaacaaagctcacg |
3544320 |
T |
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| Q |
232 |
gacaaagggtttgtctataaatatgatctcaagatgataatagacgatagtgtcaaatgcggaagaaggacgg |
304 |
Q |
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| T |
3544321 |
gacaaagggtttgtctataaatatgatctcaagatgatactagacgatagtgtcaaatgcggaagaaggacgg |
3544393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 302
Target Start/End: Original strand, 3530756 - 3530913
Alignment:
| Q |
145 |
tctaaaatcttacaatatttgacatctgattttaggtatttggaagagccaaacaaagcaatcaaatgggcatcaacaaagctcacggacaaagggtttg |
244 |
Q |
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| T |
3530756 |
tctaaaatctaacaaaaattgacatttggttgtaggtatttggaagggccaaacagggcaatcaaattggcctcaacaaagctcatagataatggatttg |
3530855 |
T |
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| Q |
245 |
tctataaatatgatctcaagatgataatagacgatagtgtcaaatgcggaagaaggac |
302 |
Q |
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| T |
3530856 |
tctacaaatataatctgaagaagatattagatgatagtatcagatgtgcaagaaggac |
3530913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 3551387 - 3551490
Alignment:
| Q |
177 |
taggtatttggaagagccaaacaaagcaatcaaatgggcatcaacaaagctcacggacaaagggtttgtctataaatatgatctcaagatgataatagac |
276 |
Q |
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|||||||||||||| || ||||| | ||||||||||| |||| ||||||| || || || |||||||| ||||||||||| ||||||||| |||| |
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| T |
3551387 |
taggtatttggaagggcaaaacaggggaatcaaatgggactcaaacaagctcatagataatggatttgtctacaaatatgatctgaagatgatattagat |
3551486 |
T |
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| Q |
277 |
gata |
280 |
Q |
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|||| |
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| T |
3551487 |
gata |
3551490 |
T |
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