View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_high_35 (Length: 301)
Name: NF11581_high_35
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 5027167 - 5027012
Alignment:
| Q |
19 |
agattaagcattgatcatccttgttggtgattaaataaatgaaactggaataaaggaaaagaaattgagagatataacatgtaaatatatctcttagttt |
118 |
Q |
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| T |
5027167 |
agattaagcattgatcatccttgttggtgattaaataaatgaaactggaataaaggaaaagaaattgagagatataacatgtaaatatatctcttagttt |
5027068 |
T |
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| Q |
119 |
attcgttaggtaagtgggtaaagagttacaaaggaaattcttaatccttcttaatt |
174 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5027067 |
attcattaggtaagtgggtaaagagttacaaaggaaattcttaatccttcttaatt |
5027012 |
T |
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