View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_high_47 (Length: 247)
Name: NF11581_high_47
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 34379816 - 34380044
Alignment:
| Q |
15 |
actaaaaactaagaaatcaaacctagttcttgacgagcaacgtcacagtttgtgtcagtgaatccaattctagaattagccaaatcatactccatccaaa |
114 |
Q |
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| T |
34379816 |
actaaaaactaagaaatcaaacctagttgttgacgagcaacatcacagtttgtgtcagagaatccaattctagaattagccaaatcatactccatccaaa |
34379915 |
T |
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| Q |
115 |
cattctgttgatgatgatgtccaataataaatgcctcaatccccaacaaatcagagttcccaaaagtgaaacaataaatccaactattactctttgccac |
214 |
Q |
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| T |
34379916 |
cattccgttgatgatgatgtccaataataaatgcctcaatccccaacaaatcagagttcccaaaagtgaaacaataaatccaactattactctttgctac |
34380015 |
T |
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| Q |
215 |
attactcactttatataacaatctctctc |
243 |
Q |
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| T |
34380016 |
attactcactttatataacaatctctctc |
34380044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 30634019 - 30634152
Alignment:
| Q |
57 |
tcacagtttgtgtcagtgaatccaattctagaattagccaaatcatactccatccaaacattctgttgatgatgatgtccaataataaatgcctcaatcc |
156 |
Q |
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| T |
30634019 |
tcacattttgtatcagcaaatccaactctagagttgaccaaatcaaactccatccacacattcatttgatgataatgtccaataatatatgcctcaattc |
30634118 |
T |
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| Q |
157 |
ccaacaaatcagagttcccaaaagtgaaacaata |
190 |
Q |
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| T |
30634119 |
ccaacaaatctgaatttccaaacgtgaaacaata |
30634152 |
T |
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