View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_high_52 (Length: 240)
Name: NF11581_high_52
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_52 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 28462701 - 28462924
Alignment:
| Q |
17 |
ataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28462701 |
ataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaag |
28462800 |
T |
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| Q |
117 |
atgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgtgaagag |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28462801 |
atgaagattctataacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgtgaagag |
28462900 |
T |
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| Q |
217 |
agaaagaacgttaatgtggtgaat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
28462901 |
agaaagaacgttaatgtggtgaat |
28462924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 7599821 - 7599598
Alignment:
| Q |
17 |
ataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7599821 |
ataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgagccctaag |
7599722 |
T |
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| Q |
117 |
atgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgtgaagag |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7599721 |
atgaagattctataacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgtgaagag |
7599622 |
T |
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| Q |
217 |
agaaagaacgttaatgtggtgaat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
7599621 |
agaaagaacgttaatgtggtgaat |
7599598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 19611062 - 19610840
Alignment:
| Q |
17 |
ataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19611062 |
ataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaag |
19610963 |
T |
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| Q |
117 |
atgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgtgaagag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19610962 |
atgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaattgaacgaagaatcgaagtgattattcgaggttgtgaagag |
19610863 |
T |
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| Q |
217 |
agaaagaacgttaatgtggtgaat |
240 |
Q |
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|||||| || |||||||||||||| |
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| T |
19610862 |
agaaag-acattaatgtggtgaat |
19610840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 23361497 - 23361274
Alignment:
| Q |
17 |
ataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaag |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23361497 |
ataacgaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaag |
23361398 |
T |
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| Q |
117 |
atgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgtgaagag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23361397 |
atgaagattctacaacgaatggaatgctgatgaatctagctatgaattgacgttgtgacttgaacgaagaatcgaagtgattattcgaggttgtgaagag |
23361298 |
T |
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| Q |
217 |
agaaagaacgttaatgtggtgaat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
23361297 |
agaaagaacgttaatgtggtgaat |
23361274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 45401913 - 45401690
Alignment:
| Q |
17 |
ataaagaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaag |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45401913 |
ataacgaataacagaatcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaag |
45401814 |
T |
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| Q |
117 |
atgaagattctacaacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgtgaagag |
216 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45401813 |
atgaagattctgcaatgaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcaaagtgattattcgaggttgtgaagag |
45401714 |
T |
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| Q |
217 |
agaaagaacgttaatgtggtgaat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
45401713 |
agaaagaacgttaatgtggtgaat |
45401690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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