View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11581_high_6 (Length: 646)

Name: NF11581_high_6
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11581_high_6
NF11581_high_6
[»] chr6 (11 HSPs)
chr6 (20-634)||(2445180-2445822)
chr6 (25-146)||(2603128-2603249)
chr6 (25-145)||(2679852-2679972)
chr6 (25-142)||(2429282-2429399)
chr6 (25-143)||(2647406-2647527)
chr6 (25-145)||(2575112-2575232)
chr6 (25-124)||(2615433-2615532)
chr6 (453-506)||(5632156-5632209)
chr6 (78-126)||(2425862-2425913)
chr6 (453-509)||(9665329-9665385)
chr6 (460-515)||(24827065-24827120)
[»] chr8 (5 HSPs)
chr8 (470-515)||(34935220-34935265)
chr8 (457-515)||(13284255-13284313)
chr8 (471-513)||(8616870-8616912)
chr8 (480-513)||(32232390-32232423)
chr8 (457-509)||(20700189-20700241)
[»] chr5 (5 HSPs)
chr5 (457-515)||(20175738-20175796)
chr5 (461-515)||(30488938-30488992)
chr5 (457-515)||(4262529-4262587)
chr5 (453-515)||(10199032-10199094)
chr5 (443-504)||(37054245-37054306)
[»] chr4 (4 HSPs)
chr4 (457-515)||(34969383-34969441)
chr4 (457-515)||(41749696-41749754)
chr4 (457-515)||(34960147-34960205)
chr4 (459-515)||(2580746-2580802)
[»] chr3 (9 HSPs)
chr3 (461-515)||(21549051-21549105)
chr3 (469-515)||(4033433-4033479)
chr3 (458-504)||(38898200-38898246)
chr3 (453-515)||(48209197-48209259)
chr3 (457-506)||(35501374-35501423)
chr3 (453-506)||(53438681-53438734)
chr3 (473-513)||(4124723-4124763)
chr3 (458-514)||(20465549-20465604)
chr3 (453-497)||(32625405-32625449)
[»] chr1 (1 HSPs)
chr1 (471-513)||(5573622-5573664)
[»] chr7 (2 HSPs)
chr7 (458-515)||(5526738-5526795)
chr7 (458-502)||(33882603-33882647)
[»] chr2 (3 HSPs)
chr2 (457-515)||(29133474-29133532)
chr2 (457-509)||(4238778-4238830)
chr2 (455-515)||(9547397-9547457)


Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 634
Target Start/End: Complemental strand, 2445822 - 2445180
Alignment:
Q  20 aaatgaaccaaaaaccattaaaaaccagtctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttaacattaatagaaaca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2445822 aaatgaaccaaaaaccattaaaaaccagtctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttaacattaatagaaaca 2445723  T
Q  120 tttttctgctcaccaccacccatttgaagtaccttttttctaatnnnnnnnncccaaatagagtaagattttctaagtgacaacgttactaaatatatat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2445722 tttttctgctcaccaccacccatttgaagtaccttttttctaataaataaaacccaaatagagtaagattttctaagtgacaacgttactaaatatatat 2445623  T
Q  220 ttgtgtttgttattcaatgttgcaacgtttttgtgggatatataggaaaagagagagtggggagtggtggtggagacataaacaa---aaagaaaaataa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||    
T  2445622 ttgtgtttgttattcaatgttgcaacgtttttgtgggatatataggaaaagagagagtggggagtggtggtggagacataaaaaacagaaagaaaaataa 2445523  T
Q  317 tttgagtggagagtgattggtatattattaagtgatgtgtatctttggctaagttatgaatctttcttttttatgaatcattctattttctatatatatg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2445522 tttgagtggagagtgattggtatattattaagtgatgtgtatctttggccaagttatgaatctttcttttttatgaatcattctattttctatatatatg 2445423  T
Q  417 gagtaacatattttgtatcaggcttcgat------------ttttgtatttggtggtggtcggagttcgaaccctaaatcttatatatattatacattgt 504  Q
    |||||||||||||||||| ||||||| ||            |||||||||||||||||||||| ||||||||||  |||||| |||||||||| ||||||    
T  2445422 gagtaacatattttgtataaggcttccatgcgttacatgcattttgtatttggtggtggtcggggttcgaaccccgaatcttgtatatattatgcattgt 2445323  T
Q  505 tcatatcaact--------cttacgaggacattcatgcattttgtatgtca----attcatattt-ctgcagtatttgaaattataaaataacaattaga 591  Q
    |||||||||||        ||||||||||||||||||||||||||||||||    |||||||||| ||||||||||||||||||||||||||||||||||    
T  2445322 tcatatcaactgagttaagcttacgaggacattcatgcattttgtatgtcatccgattcatatttactgcagtatttgaaattataaaataacaattaga 2445223  T
Q  592 atctgcgnnnnnnnggatcatccaacctaaatcggacggccta 634  Q
    |||||||       |||||||||||||||||||||||||||||    
T  2445222 atctgcgtttttttggatcatccaacctaaatcggacggccta 2445180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 2603128 - 2603249
Alignment:
Q  25 aaccaaaaaccattaaaaaccagtctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttaacattaatagaaacattttt 124  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2603128 aaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttcttaacattaatggaaacattttt 2603227  T
Q  125 ctgctcaccaccacccatttga 146  Q
    ||| ||||||||||||||||||    
T  2603228 ctgatcaccaccacccatttga 2603249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 2679852 - 2679972
Alignment:
Q  25 aaccaaaaaccattaaaaaccagtctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttaacattaatagaaacattttt 124  Q
    |||||||| |||| ||||| || || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  2679852 aaccaaaagccatgaaaaaacaatcaagaacatcagcatgcatgaaaatggacctaaaagaaccatttttctttttcttaacattaatggaaacattttt 2679951  T
Q  125 ctgctcaccaccacccatttg 145  Q
    ||| |||||||||||||||||    
T  2679952 ctgatcaccaccacccatttg 2679972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 2429399 - 2429282
Alignment:
Q  25 aaccaaaaaccattaaaaaccagtctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttaacattaatagaaacattttt 124  Q
    |||||||| |||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||    
T  2429399 aaccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacattttt 2429300  T
Q  125 ctgctcaccaccacccat 142  Q
    ||| ||||||||||||||    
T  2429299 ctgatcaccaccacccat 2429282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 2647406 - 2647527
Alignment:
Q  25 aaccaaaaaccattaaaaaccagtctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttcttt---ttcttaacattaatagaaacatt 121  Q
    |||||||| ||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||    
T  2647406 aaccaaaagccattaagaaacaatcaagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttcttaacattaatggaaacatt 2647505  T
Q  122 tttctgctcaccaccacccatt 143  Q
    |||||| |||| ||||||||||    
T  2647506 tttctgatcactaccacccatt 2647527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 2575112 - 2575232
Alignment:
Q  25 aaccaaaaaccattaaaaaccagtctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttaacattaatagaaacattttt 124  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||   |  |||  ||||||||||    
T  2575112 aaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttcttcttaacaatgtaaacattttt 2575211  T
Q  125 ctgctcaccaccacccatttg 145  Q
    ||| |||||||||||||||||    
T  2575212 ctgatcaccaccacccatttg 2575232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 2615532 - 2615433
Alignment:
Q  25 aaccaaaaaccattaaaaaccagtctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttaacattaatagaaacattttt 124  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||    
T  2615532 aaccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttcaaagaaccattcttctttttcttatcattaatggaaacattttt 2615433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 506
Target Start/End: Complemental strand, 5632209 - 5632156
Alignment:
Q  453 tttggtggtggtcggagttcgaaccctaaatcttatatatattatacattgttc 506  Q
    ||||||||||||||| |||||||| |  ||||||||||||||||||||||||||    
T  5632209 tttggtggtggtcggggttcgaacgccgaatcttatatatattatacattgttc 5632156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 2425913 - 2425862
Alignment:
Q  78 ttaaaagaaccatttttctttt---tcttaacattaatagaaacatttttct 126  Q
    ||||||||||||||||||||||   ||||||||||||| |||||||||||||    
T  2425913 ttaaaagaaccatttttctttttcttcttaacattaatggaaacatttttct 2425862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 509
Target Start/End: Complemental strand, 9665385 - 9665329
Alignment:
Q  453 tttggtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcata 509  Q
    ||||||||||||||||||||||||||   | |||| |||||||||| ||||||||||    
T  9665385 tttggtggtggtcggagttcgaaccccggaccttacatatattatatattgttcata 9665329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 24827120 - 24827065
Alignment:
Q  460 gtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    |||||||| ||||||||||| || ||||||||| |||| |||||| ||||||||||    
T  24827120 gtggtcggggttcgaaccctgaaccttatatattttatgcattgtccatatcaact 24827065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 515
Target Start/End: Complemental strand, 34935265 - 34935220
Alignment:
Q  470 ttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||    
T  34935265 ttcgaaccctaaatcttatatatattatgcattgtttatatcaact 34935220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 13284255 - 13284313
Alignment:
Q  457 gtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    |||||||| || ||| |||||  ||| ||||||||||||||||||||||||||||||||    
T  13284255 gtggtggttggggtttgaacctcaaaccttatatatattatacattgttcatatcaact 13284313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 513
Target Start/End: Original strand, 8616870 - 8616912
Alignment:
Q  471 tcgaaccctaaatcttatatatattatacattgttcatatcaa 513  Q
    |||||||  ||| ||||||||||||||||||||||||||||||    
T  8616870 tcgaacctcaaaccttatatatattatacattgttcatatcaa 8616912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 513
Target Start/End: Original strand, 32232390 - 32232423
Alignment:
Q  480 aaatcttatatatattatacattgttcatatcaa 513  Q
    |||||||||||||||||| |||||||||||||||    
T  32232390 aaatcttatatatattatgcattgttcatatcaa 32232423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 509
Target Start/End: Complemental strand, 20700241 - 20700189
Alignment:
Q  457 gtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcata 509  Q
    ||||| |||||| ||||||||||||| |||| |||| ||||||||||| ||||    
T  20700241 gtggttgtcggaattcgaaccctaaaccttacatattttatacattgtccata 20700189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 20175796 - 20175738
Alignment:
Q  457 gtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||| |||||||||||| || |||||| ||||||||||||||||| |||| |||||    
T  20175796 gtggtggccggagttcgaactctgaatcttgtatatattatacattgtccataccaact 20175738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 30488992 - 30488938
Alignment:
Q  461 tggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||||||| |||||| ||| ||| |||||||||| |||||||||||||||||    
T  30488992 tggtcggagtttgaaccccaaaccttgtatatattatgcattgttcatatcaact 30488938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 4262529 - 4262587
Alignment:
Q  457 gtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||||| |||||  |||| |||| ||||||| ||||||||||||||| ||||||||    
T  4262529 gtggtggtcagagtttaaaccttaaaccttatatgtattatacattgttcttatcaact 4262587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 515
Target Start/End: Complemental strand, 10199094 - 10199032
Alignment:
Q  453 tttggtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    |||||||||||||||  ||||||||| | | |||||||||||||| |||||| |||| |||||    
T  10199094 tttggtggtggtcgggattcgaaccccacaccttatatatattatgcattgtccataccaact 10199032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 37054245 - 37054306
Alignment:
Q  443 gatttttgtatttggtggtggtcggagttcgaaccctaaatcttatatatattatacattgt 504  Q
    ||||||| | ||| ||||||||||||||| ||||||  || |||||||||||||| ||||||    
T  37054245 gattttttttttttgtggtggtcggagtttgaaccccgaaccttatatatattatgcattgt 37054306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 34969383 - 34969441
Alignment:
Q  457 gtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||||||||||| ||||||| || |||  |||||||||| ||||||||||||||||    
T  34969383 gtggtggtcggagtttgaaccctgaaccttgcatatattatatattgttcatatcaact 34969441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 41749754 - 41749696
Alignment:
Q  457 gtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||| || ||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  41749754 gtggtggccgaagttcaaaccttaaattttatatattttatacattgttcatatcaact 41749696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 34960147 - 34960205
Alignment:
Q  457 gtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||||||| |||||||||   ||||||||||||||||| ||||||| ||| |||||    
T  34960147 gtggtggtcggggttcgaacctcgaatcttatatatattatgcattgtttataccaact 34960205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 2580802 - 2580746
Alignment:
Q  459 ggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||| || |||||||||| ||||||||||||||||  |||||| |||| |||||    
T  2580802 ggtggtcagaattcgaaccctgaatcttatatatattacgcattgtccataccaact 2580746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 21549105 - 21549051
Alignment:
Q  461 tggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||| |||||||||||||| |||  |||||||||||||||| ||||||||||    
T  21549105 tggtcggggttcgaaccctaaaccttgcatatattatacattgtccatatcaact 21549051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 515
Target Start/End: Complemental strand, 4033479 - 4033433
Alignment:
Q  469 gttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    |||||||| | |||||||| ||||||||| |||||||||||||||||    
T  4033479 gttcgaacaccaaatcttacatatattatgcattgttcatatcaact 4033433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 38898200 - 38898246
Alignment:
Q  458 tggtggtcggagttcgaaccctaaatcttatatatattatacattgt 504  Q
    ||||||||||  ||||||||||||| |||| ||||||||||||||||    
T  38898200 tggtggtcgggattcgaaccctaaaccttacatatattatacattgt 38898246  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 515
Target Start/End: Original strand, 48209197 - 48209259
Alignment:
Q  453 tttggtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||||||||||| ||| ||||||| || ||||||||||||||  ||||| | ||||||||    
T  48209197 tttggtggtggtcggggtttgaaccctgaaccttatatatattatgtattgtccctatcaact 48209259  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 506
Target Start/End: Original strand, 35501374 - 35501423
Alignment:
Q  457 gtggtggtcggagttcgaaccctaaatcttatatatattatacattgttc 506  Q
    |||||||||||| ||||||||||  |||||| ||||||||| ||||||||    
T  35501374 gtggtggtcggaattcgaaccctggatcttacatatattatgcattgttc 35501423  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 506
Target Start/End: Original strand, 53438681 - 53438734
Alignment:
Q  453 tttggtggtggtcggagttcgaaccctaaatcttatatatattatacattgttc 506  Q
    |||||||||||||| |||| ||| |  |||||||| ||||||||||||||||||    
T  53438681 tttggtggtggtcgaagtttgaaactcaaatcttacatatattatacattgttc 53438734  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 513
Target Start/End: Complemental strand, 4124763 - 4124723
Alignment:
Q  473 gaaccctaaatcttatatatattatacattgttcatatcaa 513  Q
    |||||| |||||||| ||| |||||||||||||||||||||    
T  4124763 gaaccccaaatcttacatagattatacattgttcatatcaa 4124723  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 514
Target Start/End: Original strand, 20465549 - 20465604
Alignment:
Q  458 tggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaac 514  Q
    ||||||||||||||||||||| ||| |||| |||| |||||||||||  ||||||||    
T  20465549 tggtggtcggagttcgaaccc-aaaccttacatattttatacattgtctatatcaac 20465604  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 497
Target Start/End: Original strand, 32625405 - 32625449
Alignment:
Q  453 tttggtggtggtcggagttcgaaccctaaatcttatatatattat 497  Q
    ||||||||||||||| ||| |||||||||| ||| ||||||||||    
T  32625405 tttggtggtggtcggggtttgaaccctaaaccttgtatatattat 32625449  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 513
Target Start/End: Complemental strand, 5573664 - 5573622
Alignment:
Q  471 tcgaaccctaaatcttatatatattatacattgttcatatcaa 513  Q
    ||||||||||||| ||| |||||||||||||||||||||||||    
T  5573664 tcgaaccctaaattttacatatattatacattgttcatatcaa 5573622  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 515
Target Start/End: Complemental strand, 5526795 - 5526738
Alignment:
Q  458 tggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    |||||||||| ||| |||||| |||||||||||||||||| |||||| |||| |||||    
T  5526795 tggtggtcggggtttgaaccccaaatcttatatatattatgcattgtccataccaact 5526738  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 33882603 - 33882647
Alignment:
Q  458 tggtggtcggagttcgaaccctaaatcttatatatattatacatt 502  Q
    |||||||||||||| ||| || |||||||| ||||||||||||||    
T  33882603 tggtggtcggagtttgaatccaaaatcttacatatattatacatt 33882647  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 29133474 - 29133532
Alignment:
Q  457 gtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||||||| |||||||||||| |||||  |||| |||| ||||||||||| |||||    
T  29133474 gtggtggtcggggttcgaaccctagatcttgcatattttatgcattgttcataccaact 29133532  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 509
Target Start/End: Complemental strand, 4238830 - 4238778
Alignment:
Q  457 gtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcata 509  Q
    ||||||||||||||||||||||  || |||| ||||||||| |||||| ||||    
T  4238830 gtggtggtcggagttcgaaccccgaaccttacatatattatgcattgtccata 4238778  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 515
Target Start/End: Original strand, 9547397 - 9547457
Alignment:
Q  455 tggtggtggtcggagttcgaaccctaaatcttatatatattatacattgttcatatcaact 515  Q
    ||||||||||||| ||| |||||| ||| |||  ||||||||| |||||| ||||||||||    
T  9547397 tggtggtggtcggggtttgaaccccaaaccttgcatatattatgcattgtccatatcaact 9547457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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