View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11581_high_62 (Length: 203)
Name: NF11581_high_62
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_high_62 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 38356364 - 38356177
Alignment:
| Q |
12 |
acatcattttcagttataaaaagaagggnnnnnnnnnctttcccttgtttagtgtttattgtttccattagaaagaagnnnnnnncaactttttatttca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
38356364 |
acatcattttcagttataaaaagaagggtttttt----tctcccttgtttagtgtttattgtttccattagaaagaagaaaaaaacaactttttgtttca |
38356269 |
T |
|
| Q |
112 |
aatgggtgttctacaatctatatttctctacctggttttactacaagcatgcatcaaggtttcttcttacagagatgaagagtggaagtctg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38356268 |
aatgggtgttctacaatctatatttctctacctggttttactacaagcatgcatcaaggtttcttcttacagagatgaagagtggaagtctg |
38356177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University