View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11581_low_1 (Length: 1221)

Name: NF11581_low_1
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11581_low_1
NF11581_low_1
[»] chr1 (3 HSPs)
chr1 (396-1205)||(8446166-8446980)
chr1 (173-438)||(8445876-8446141)
chr1 (11-71)||(8445814-8445874)
[»] chr5 (1 HSPs)
chr5 (146-189)||(43061967-43062010)


Alignment Details
Target: chr1 (Bit Score: 727; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 396 - 1205
Target Start/End: Original strand, 8446166 - 8446980
Alignment:
Q  396 ttacaaagggaaagagttagggacaaagattagaacaatagagcata-----------ccctgtaatttacaaaaattagatactttagtctcttatgtt 484  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||           ||||||||||||||||||||||||||||||||||||||||||    
T  8446166 ttacaaagggaaagagttagggacaa-gattagaacaatagagaatagaggtgaagatccctgtaatttacaaaaattagatactttagtctcttatgtt 8446264  T
Q  485 cgtacccctagaaatccactttagattatattatattagtttttatgccaaaggaatagctagtgtgccataatttagcttcctagatcactagaggcca 584  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       
T  8446265 cgtacccctagaaatccactttagattagattatattagtttttatgccaaaggaatagctagtgtgccataatttagcttcctagatcactggagg--- 8446361  T
Q  585 agtgacatttttcaagataatcaaaatttagaatcaaagcttaacaatttagcatcctagatcactcgaatcaaaatgttcatcatacaaataaagaaaa 684  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8446362 --tgacatttttcaagataatcaaaatttagaatcaaagcttaacaatttagcatcctaaatcactcgaatcaaaatgttcatcatacaaataaagaaaa 8446459  T
Q  685 ggagccatgtcaacaatcacgatagaaagtgaaaaatattataaaatgcatagaaagcatagtactggtcgttattaatctgctgatctaacgtctatga 784  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446460 ggagccatgtcaacaatcacgatagaaattgaaaaatattataaaatgcatagaaagcatagtactggtcgttattaatctgctgatctaacgtctatga 8446559  T
Q  785 gtgcgggggtaaaaggaaatgggacttgctccggtctgaaaaaatctcgcattcaagcattagggacatggctggactgtttggtctagaatatcaaaga 884  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8446560 gtgcgggggtaaaaggaaatgggacttgctccggtctgaaaaaatctcgcattcaagcattagggacatggttggactgtttggtctagaatatcaaaga 8446659  T
Q  885 gctaccaatgttccaaatgtgtgaatgtgattaatgaatcaaggttttgggtacaaatcgatgacctttttccacgactcacgtgtggatatttccgtcc 984  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446660 gctaccaatgttccaaatgtgtgaatgtgattaatgaatcaaggttttgggtacaaatcgatgacctttttccacgactcacgtgtggatatttccgtcc 8446759  T
Q  985 accaccttgacacattgtttcttgacgaagaagtaaacaaatcagcggtgtcggcatcagcagcagccaccaagtagtgaatattgggaagatgtgaaag 1084  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446760 accaccttgacacattgtttcttgacgaagaagtaaacaaatcagcggtgtcggcatcagcagcagccaccaagtagtgaatattgggaagatgtgaaag 8446859  T
Q  1085 gtcggcaagtgtgaactcatcaccagccaagtagcgagtttccccaagcctcttatcgtacacatcaagcactttcttgagcttttctttactctgtcga 1184  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446860 gtcggcaagtgtgaattcatcaccagccaagtagcgagtttccccaagcctcttatcgtacacatcaagcactttcttgagcttttctttactctgtcga 8446959  T
Q  1185 attgctccttcgtcttgtttg 1205  Q
    |||||||||||||||||||||    
T  8446960 attgctccttcgtcttgtttg 8446980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 173 - 438
Target Start/End: Original strand, 8445876 - 8446141
Alignment:
Q  173 ggccttctaattattattatccaagttaagtgattttgttactaatttatacttgttgctatcataatcttgaatgaaaaccctggaactccactagtgt 272  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8445876 ggccttctaattattattatccaagttaagtgattt-gttactaatttatacttgttgctatcataatcttgaatgaaaaccctggaactccactagtgt 8445974  T
Q  273 atgctatggtcccaagtttgaataaggcatgggcaggggcgatgtcgcttttgggagacagagtattcc-aatccacaatagaaacaagatcaaagggag 371  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8445975 atgctatggtcccaagtttgaataaagcatgggcaggggtgatgtcgcttttgggagacagagtattccaaatccacaatagaaacaagatcaaagggag 8446074  T
Q  372 acggggaagaaaacagttgagggattacaaagggaaagagttagggacaaagattagaacaatagag 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446075 acggggaagaaaacagttgagggattacaaagggaaagagttagggacaaagattagaacaatagag 8446141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 8445814 - 8445874
Alignment:
Q  11 gcagcacagactgaacctccctataatatttggcgctctaagcctactaaagcacacacaa 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8445814 gcagcacagactgaacctccctataatatttggcgctctaagcctaccaaagcacacacaa 8445874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 43061967 - 43062010
Alignment:
Q  146 tttagattttggtattgttttgtgtttggccttctaattattat 189  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  43061967 tttagattttggtattgttttgtggttggtcttctaattattat 43062010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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