View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_10 (Length: 569)
Name: NF11581_low_10
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 21484163 - 21483612
Alignment:
| Q |
1 |
tcaacaagttccgatgatagtgcatgatgatcgggaaaataaaccgcaacaagtgaatatcgaggagaataacgacgatgtttttgtgtgtgacggtgta |
100 |
Q |
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| T |
21484163 |
tcaacaagttccgatgatagtgcatgatgatcgggaaaataaaccgcaacaagtgaatatcgaggagaataacgacgatgtttttgtgtgtgacggtgta |
21484064 |
T |
|
| Q |
101 |
aatggggaagagagtattcaaggagatgaattaggtgcatgtgatggtgtaagtgatgaaatgagtatggttttcttggagtggcttaaatcgaacaaag |
200 |
Q |
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| T |
21484063 |
aatggggaagagagtattcaaggagatgaattaggtgcatgtgatggtgtaagtgatgaaatgagtatggttttcttggagtggcttaaatcgaacaaag |
21483964 |
T |
|
| Q |
201 |
acagtgtctccgcgaatgatttgaggaatgtgaagcttaagaaatcgacgatcgaaagtgctgctaggagattaggtggtggaaaagaagggatgaaaca |
300 |
Q |
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| T |
21483963 |
acagtgtctccgcgaatgatttgaggaatgtgaagcttaagaaatcaacgattgaaagtgctgctaggagattaggtggtggaaaagaagggatgaaaca |
21483864 |
T |
|
| Q |
301 |
attgttgaagctcattcttgaatgggttcaaactagtcatcttcacaacaaaagactcaaagaaaacgccaacacgaacacaataataccttcaaatatt |
400 |
Q |
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| T |
21483863 |
attgttgaagctcattcttgaatgggttcaaactagtcatcttcataacaaaagactcaaagaaaacgccaacacgaacacaataataccttcaaatatt |
21483764 |
T |
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| Q |
401 |
gttcctcaacaacaacattttcaagatccgtgtcagaaccaaaacacagcaaacacatttgcacctgaatcgaacacgtgtttcaaccaaacatcatggc |
500 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
21483763 |
gttcctcaacaacatcattttcaagatccgtgtcagaaccaaaacacagcaaacacatttgcacctgaatcgaacgcatgtttcaaccaaacatcatggc |
21483664 |
T |
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| Q |
501 |
tagatcaaacacctctcattgtacctccacaacaattttcacaaccaatggt |
552 |
Q |
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| T |
21483663 |
tagatcaaacacctctcattgtacctccacaacaattttcacaaccaatggt |
21483612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26551590 - 26551516
Alignment:
| Q |
1 |
tcaacaagttccgatgatagtgcatgatgatcgggaaaataaaccgcaacaagtgaatatcgaggagaataacga |
75 |
Q |
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||||||| || | ||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||| |
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| T |
26551590 |
tcaacaaatttcaatgatagtgcatgatgaaagggaaaataaaccacaacaagtgaatattgaggaaaataacga |
26551516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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