View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_11 (Length: 509)
Name: NF11581_low_11
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 10853324 - 10853678
Alignment:
| Q |
1 |
agaatgctggtgttgctgggtgggaagaatgtacaagtgatgagttgttgtctggtattggaagtttgtcgagcaagaaacggctgaatatgattgaaaa |
100 |
Q |
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| T |
10853324 |
agaatgctggtgttgttgggtgggaagaatgtacaagtgatgagttgttgtctggtattggaagtttgtcaagcaagaaacggctgaatatgattgaaaa |
10853423 |
T |
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| Q |
101 |
ggcattgaaggaagaagagaagaggattaaccgcgaggcggagaagattgtcgaatgggctaaacatgtgtctggtaggatgaatgtttctgatattgag |
200 |
Q |
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| T |
10853424 |
ggcattgaaggaagaagagaagaggattaaccgcgaggcggagaagattgttgaatgggctaaacatgtgtctggtaggatgaatgttcctgatattgag |
10853523 |
T |
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| Q |
201 |
gatgggcttagtgatgattagggtaatgatccagcatt-cattttggatctctttctaattctgaattgtctaatcagtttttacaaaaatgttgctagc |
299 |
Q |
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| T |
10853524 |
gacgagcttagtgatgattagggtatcgattcagcattacatgttggatgtctttctagttctaagttgccttattagttcttacataagtgttgctag- |
10853622 |
T |
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| Q |
300 |
taatgttccaaatctgtcttgtatttctatacatgttcctgtttacatatatacaaatattct |
362 |
Q |
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| T |
10853623 |
-------ccaaatttgtcttgtatttctatacatgttcctgtttacatatatacaaatattct |
10853678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 10853672 - 10853781
Alignment:
| Q |
384 |
atattctgttttctctgttaaacaattaattgattgaagaggttaatttgattagatgatcttctaaatgttttcaccttcagtatatttattgaaatgc |
483 |
Q |
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| T |
10853672 |
atattctgttttctctgttaaacaataaattgattgaagagtttattttgatttgatgatcttcttaatgttttcacctttagtgtatttattcaaaggc |
10853771 |
T |
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| Q |
484 |
aatgcaaagt |
493 |
Q |
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| T |
10853772 |
aatgcaaagt |
10853781 |
T |
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