View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_13 (Length: 502)
Name: NF11581_low_13
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 217 - 488
Target Start/End: Complemental strand, 28654955 - 28654681
Alignment:
| Q |
217 |
tccagcttataagtctcagtgtccgagaggcaacttctaacaagtgtatatgatga---catagacataccattgcaatggcgtctctagcagaaagagc |
313 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
28654955 |
tccagcttataagtctcaccgtccgagaggcaactcctaacatgtgtatatgatgatgacatagacataccattgcaataccgtctctagcagaaagagc |
28654856 |
T |
|
| Q |
314 |
gacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttcacatacttgaaatttctcatcccaaaacttcttacc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28654855 |
aacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttcacatacttgaaatttctcatcccaaaacttcttacc |
28654756 |
T |
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| Q |
414 |
gatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatcgcatgactgcatatatatatgt |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28654755 |
gatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatcgcatgactgcatatatatatgt |
28654681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 260 - 485
Target Start/End: Complemental strand, 28635628 - 28635403
Alignment:
| Q |
260 |
gtgtatatgatgacatagacataccattgcaatggcgtctctagcagaaagagcgacaatatcagcacatgacactgtcaagggacattctttctcaaca |
359 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
28635628 |
gtgtatatgatgacatagacataccattgcaataccgtctctagcagatagagcgacaatgtcagcgcatgacactgtcaagggacattctttctcgaca |
28635529 |
T |
|
| Q |
360 |
gcagctttgatggtgttcacatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaagg |
459 |
Q |
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|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| | || |
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| T |
28635528 |
gctgctttgatggtattcacatacttgaaatttctcatcccaaaacttctcaccgatgtctgctccgataccacaccatgcaccgttgctaaaagcaggg |
28635429 |
T |
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| Q |
460 |
atgcatcgcatgactgcatatatata |
485 |
Q |
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||||||| |||||||||||| ||||| |
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| T |
28635428 |
atgcatcacatgactgcatacatata |
28635403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 278 - 477
Target Start/End: Complemental strand, 28605442 - 28605243
Alignment:
| Q |
278 |
acataccattgcaatggcgtctctagcagaaagagcgacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttc |
377 |
Q |
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||||||| | ||||| ||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| |||| |||||||||||||||| || |
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| T |
28605442 |
acataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgacactgtcaaaggacattctttttcaagagcagctttgatggtgctc |
28605343 |
T |
|
| Q |
378 |
acatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatcgcatgactgca |
477 |
Q |
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||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||| || ||| | ||||| | ||||||||| |||||||||| |
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| T |
28605342 |
acatacttgaagtttctcatcccaaaacttctctccgctgtctgctccgataccacgccgtgcaccgtctccaaaagcagggatgcatcacatgactgca |
28605243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 278 - 476
Target Start/End: Complemental strand, 28663293 - 28663095
Alignment:
| Q |
278 |
acataccattgcaatggcgtctctagcagaaagagcgacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttc |
377 |
Q |
| |
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||||||||| ||||| |||||||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
28663293 |
acataccatggcaattccgtctctagcggaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggttttt |
28663194 |
T |
|
| Q |
378 |
acatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatcgcatgactgc |
476 |
Q |
| |
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||||||||||| |||| |||||| ||||||| | |||||||| |||||||| ||| ||| | || | ||||||| | ||||||||| ||||||||| |
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| T |
28663193 |
acatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcacatgactgc |
28663095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 28655083 - 28655027
Alignment:
| Q |
78 |
aaaacatgatatgcttctcgcgttatttaattatatattactattttacatgcattc |
134 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28655083 |
aaaacatgatatgcttctcccgttatttaattatatattactattttacatgcattc |
28655027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 50880618 - 50880574
Alignment:
| Q |
168 |
ttttaggcccagctcggctgagctatttgcactccctcagggacg |
212 |
Q |
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|||||||||||||||| |||||| ||||||| |||||||||||| |
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| T |
50880618 |
ttttaggcccagctcgtttgagctgtttgcaccccctcagggacg |
50880574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 54779487 - 54779450
Alignment:
| Q |
172 |
aggcccagctcggctgagctatttgcactccctcaggg |
209 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||| |
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| T |
54779487 |
aggcccagctcggttgagctgtttgcactccctcaggg |
54779450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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