View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_14 (Length: 501)
Name: NF11581_low_14
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 36673304 - 36673776
Alignment:
| Q |
19 |
cttacattgctcatattgttgtaaacttcaagcattgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaactt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673304 |
cttacattgctcatattgttgtaaacttcaagcattgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaactt |
36673403 |
T |
|
| Q |
119 |
cattttcaagtccttccctggtcaaagatttatcaacgacgttataaaaactcaaagggttaccacatagattagtagtgtcagataaacgcgacaattc |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36673404 |
cattttcaagtccttccccggtcaaagatttatcaatgacgttataaaaactcaaagggttaccacatagattagtagtgtcagatgaacgcgacaattc |
36673503 |
T |
|
| Q |
219 |
attatatgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcgtccaccttaaacatcatgccaagatgatct |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673504 |
attatatgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcgtccaccttaaacatcatgccaagatgatct |
36673603 |
T |
|
| Q |
319 |
tcaatgttgggattcataaatttggcctctccaaaattggatatttttggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgca |
418 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673604 |
tcaatgttgggattcataaatttggcctctccaaaattggatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgca |
36673703 |
T |
|
| Q |
419 |
ctatgcccaaatcacagctatgatgcagccatgataaccctcttgctattccaagtgcaatgttgaccctttg |
491 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673704 |
ctatgcccaaatcacagctatgatgcagccatgataaccctcttgctattccaagtgcaatgttgaccctttg |
36673776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 28 - 488
Target Start/End: Original strand, 36676068 - 36676528
Alignment:
| Q |
28 |
ctcatattgttgtaaacttcaagcattgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676068 |
ctcatattgttgtaaacttcaagcattgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaa |
36676167 |
T |
|
| Q |
128 |
gtccttccctggtcaaagatttatcaacgacgttataaaaactcaaagggttaccacatagattagtagtgtcagataaacgcgacaattcattatatgt |
227 |
Q |
| |
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||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36676168 |
gtccttccccggtcaaagatttatcaataacattataaaaactcaaagggttaccacatagattagtagtgtcagatgaacgcgacaattcattatatgt |
36676267 |
T |
|
| Q |
228 |
tttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcgtccaccttaaacatcatgccaagatgatcttcaatgttg |
327 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36676268 |
tttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcgttcaccttaaacatcatgccaagatgatcttcaatgttg |
36676367 |
T |
|
| Q |
328 |
ggattcataaatttggcctctccaaaattggatatttttggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgccca |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36676368 |
ggattcataaatttggcctctccaaaattggatatttttggttcaaagttctcatctagcaatatgcattctgaacatatgctaaaatgcactatgccca |
36676467 |
T |
|
| Q |
428 |
aatcacagctatgatgcagccatgataaccctcttgctattccaagtgcaatgttgaccct |
488 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
36676468 |
aatcgcatgtatgatgcagccatgataaccctcttgctattccaaatgcaatgttgaccct |
36676528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 36695592 - 36695862
Alignment:
| Q |
23 |
cattgctcatattgttgtaaacttcaagcattgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcatt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36695592 |
cattgctcatattgttgtaaacttcaagcattgttgacctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcatt |
36695691 |
T |
|
| Q |
123 |
ttcaagtccttccctggtcaaagatttatcaacgacgttataaaaactcaaagggttaccacatagattagtagtgtcagataaacgcgacaattcatta |
222 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
36695692 |
ttcaagtccttccccggtcaaagatttatcaataacattataaaaactcaaagggttaccacatagattagtagtgtcagatgaacgcgacaattcatta |
36695791 |
T |
|
| Q |
223 |
tatgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcgtccac |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36695792 |
tatgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcgtccac |
36695862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 24 - 488
Target Start/End: Original strand, 36683740 - 36684201
Alignment:
| Q |
24 |
attgctcatattgttgtaaacttcaagcattgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattt |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||| | | ||| | |||||||||||| |||||||| | ||||| ||| ||| ||||| |
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| T |
36683740 |
attgctcaaattgttgtaaacttcaagcattgttggtctttggttt---ataggtttaacacactcacatgcaatctttaggagagcacatactccattt |
36683836 |
T |
|
| Q |
124 |
tcaagtccttccctggtcaaagatttatcaacgacgttataaaaactcaaagggttaccacatagattagtagtgtcagataaacgcgacaattcattat |
223 |
Q |
| |
|
|||| ||||| || | || ||||||||||| | | ||||||||| | |||||||| || | |||||||| ||| ||| |||| | || ||| |||| |
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|
| T |
36683837 |
tcaaatccttgcccaggcagagatttatcaatggcattataaaaatttgaagggttatcatagagattagtggtggtggatgaacgagtcagttcgttat |
36683936 |
T |
|
| Q |
224 |
atgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcgtccaccttaaacatcatgccaagatgatcttcaat |
323 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||| |||||||||||||| |
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|
| T |
36683937 |
atgtttttcctgtaatcagttcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcattcactttaaacatcgtgctgagatgatcttcaat |
36684036 |
T |
|
| Q |
324 |
gttgggattcataaatttggcctctccaaaattggatatttttggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatg |
423 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
36684037 |
gttgggattcataaatttcgcctgcccaaaattggatattttgggttcaaaattctcatctagcaatatgcattgtgaatatatattaaaatgcactatg |
36684136 |
T |
|
| Q |
424 |
cccaaatcacagctatgatgcagccatgataaccctcttgctattccaagtgcaatgttgaccct |
488 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
36684137 |
cccaaatcacagctatgatggagccatgataatcctcttgctaatccaagtgcaatgttgaccct |
36684201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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