View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11581_low_17 (Length: 460)

Name: NF11581_low_17
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11581_low_17
NF11581_low_17
[»] chr5 (10 HSPs)
chr5 (223-460)||(34241303-34241538)
chr5 (247-460)||(34233530-34233743)
chr5 (14-178)||(34241583-34241747)
chr5 (248-460)||(42122614-42122833)
chr5 (290-460)||(42128052-42128228)
chr5 (268-460)||(42116871-42117082)
chr5 (248-460)||(41714260-41714465)
chr5 (285-451)||(41572765-41572929)
chr5 (307-457)||(41618398-41618549)
chr5 (128-178)||(34234338-34234388)
[»] chr2 (4 HSPs)
chr2 (248-460)||(11995141-11995353)
chr2 (283-460)||(12247609-12247789)
chr2 (396-460)||(32682431-32682495)
chr2 (280-342)||(32682495-32682557)
[»] chr4 (1 HSPs)
chr4 (271-460)||(11117294-11117490)
[»] chr3 (1 HSPs)
chr3 (383-460)||(8522379-8522456)
[»] chr6 (1 HSPs)
chr6 (353-460)||(25523774-25523881)
[»] chr8 (1 HSPs)
chr8 (271-308)||(30021068-30021105)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 223 - 460
Target Start/End: Complemental strand, 34241538 - 34241303
Alignment:
Q  223 ctagatcaaataagaatgagtcgatagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccaga 322  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  34241538 ctagatcaaataagaatgagtcgatagattgtcaaactcacatcaaaacttattttaaacaga--gtaaaaactaacacacaatagagaaaataaccaga 34241441  T
Q  323 ataataaaactatgacatttgcaccatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccacca 422  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34241440 ataataaaactatgacatttgcaccatctgattcatggttggaccattgtttctcctcacttatgttctcctattcactcttctcttaggatgaccacca 34241341  T
Q  423 aatatcatcacaaaccatctaggctttccaattaaaaa 460  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34241340 aatatcatcacaaaccatctaggctttccaattaaaaa 34241303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 247 - 460
Target Start/End: Complemental strand, 34233743 - 34233530
Alignment:
Q  247 tagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacaca--atagagaaaataaccagaataataaaactatgacatttgc 344  Q
    |||||||| ||||||||| ||||||||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  34233743 tagattgttacactcacaccaaaacttattttaaacaga--gtaaaaactaacacacacaatagagaaaataaccagaataataaaactatgacatttgc 34233646  T
Q  345 accatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctag 444  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34233645 accatctgattcatggttggaccattgtttctcctcacttatgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctag 34233546  T
Q  445 gctttccaattaaaaa 460  Q
    ||||||||||||||||    
T  34233545 gctttccaattaaaaa 34233530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 34241747 - 34241583
Alignment:
Q  14 gatgaagtataataacacagaatcaaaaactctaactccattttcatcctgggaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34241747 gatgaagtataataacacagaatcaaaaactctaactccattttcatcctggaaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt 34241648  T
Q  114 ggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241647 ggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 34241583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 248 - 460
Target Start/End: Original strand, 42122614 - 42122833
Alignment:
Q  248 agattgtcacactcaca-tcaaaacttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgca 345  Q
    ||||||||||||||| | |||| | ||||||||||||||||||||||| | ||||||||| ||| ||| |||| | || |||||||||||||||||||||    
T  42122614 agattgtcacactcaaaatcaaga-ttattttaaacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgca 42122712  T
Q  346 ccatcttattc------atggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaacca 439  Q
    |||||| ||||      ||||||| |||||     ||||||||||||||||||||  ||||||||||||||||  |||||||||||||||| |||| |||    
T  42122713 ccatctgattctgattcatggttgaaccatgtgccctcctcactcttgttctccttgtcactcttctcttaggcggaccaccaaatatcatgacaagcca 42122812  T
Q  440 tctaggctttccaattaaaaa 460  Q
    |||||||||||||||||||||    
T  42122813 tctaggctttccaattaaaaa 42122833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 290 - 460
Target Start/End: Original strand, 42128052 - 42128228
Alignment:
Q  290 aaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc------atggttggaccattgtttctcctcact 383  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||      ||||||| |||||     |||||||||    
T  42128052 aaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattctgattcatggttgaaccatgtgccctcctcact 42128151  T
Q  384 cttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaa 460  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||| |||| |||||||| |||| ||||||||||    
T  42128152 cttgttctccttgtcactcttctcttaggctgaccaccaaatatcataacaagccatctagacttttcaattaaaaa 42128228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 268 - 460
Target Start/End: Original strand, 42116871 - 42117082
Alignment:
Q  268 aaacttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc---------- 356  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||              
T  42116871 aaacttattttaagaagaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattctgattctgat 42116970  T
Q  357 --------atggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctt 448  Q
            ||||||| ||||| ||| || |||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  42116971 tctgattcatggttgtaccatggttccttctcattcttgttcttcttttcactcttctcttaggctgaccaccaaatatcatcacaatccatctaggctt 42117070  T
Q  449 tccaattaaaaa 460  Q
    ||||||||||||    
T  42117071 tccaattaaaaa 42117082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 248 - 460
Target Start/End: Complemental strand, 41714465 - 41714260
Alignment:
Q  248 agattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcacc 347  Q
    |||||||||||||||||||||| ||||||||||||| || |    |||||||| |   ||||| ||| || || |||  |||||||| ||||||||||||    
T  41714465 agattgtcacactcacatcaaa-cttattttaaacacaagg----aactaacaaag--tagaggaaaaaatcacaattctaaaactacgacatttgcacc 41714373  T
Q  348 atcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggct 447  Q
    ||   ||||||||||| ||||||| | ||||||| |||||||||||   ||||| |||||||||| ||||||||||||||||| |||| |||||||||||    
T  41714372 attcgattcatggttgaaccattggtcctcctcattcttgttctccctgtcactattctcttaggctgaccaccaaatatcatgacaagccatctaggct 41714273  T
Q  448 ttccaattaaaaa 460  Q
    |||| || |||||    
T  41714272 ttccgatcaaaaa 41714260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 451
Target Start/End: Complemental strand, 41572929 - 41572765
Alignment:
Q  285 aaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattcatggttggaccattgtttctcctcactc 384  Q
    |||| ||||||||||||| ||  |||||||||| ||||| ||||||||||| |||| |||||||||| |||||||||||  ||||   ||||||||||||    
T  41572929 aaaggaaaaactaacacagaa--gagaaaataatcagaacaataaaactatcacatctgcaccatctaattcatggttgagccatgaattctcctcactc 41572832  T
Q  385 ttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttcc 451  Q
    || | |||||  | ||||||  |||||| ||||| ||||  |||||||||| |||||||||||||||    
T  41572831 ttatcctccttgtaactctttgcttaggttgacctccaaccatcatcacaagccatctaggctttcc 41572765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 457
Target Start/End: Complemental strand, 41618549 - 41618398
Alignment:
Q  307 agagaaaataaccagaataataaaa-ctatgacatttgcaccatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttc 405  Q
    ||||||||||| ||||| ||||||| |||| |||| ||||| |||| |||||||||||  ||||   |||||||||||||||| |||||  ||||||||     
T  41618549 agagaaaataatcagaacaataaaaactatcacatctgcactatctaattcatggttgagccatgagttctcctcactcttgtgctccttgtcactcttt 41618450  T
Q  406 tcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaa 457  Q
     |||||| ||||| ||||  |||||||||| |||||||||||||||||||||    
T  41618449 gcttaggttgacctccaaccatcatcacaagccatctaggctttccaattaa 41618398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 34234388 - 34234338
Alignment:
Q  128 tttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 178  Q
    |||| ||||||||||||| |||||||||||||||||| || | ||||||||    
T  34234388 tttctgtttgtgtacttgcaaaactcaattttgtactaataagattagatg 34234338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 248 - 460
Target Start/End: Complemental strand, 11995353 - 11995141
Alignment:
Q  248 agattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccagaat----aataaaactatgacatttg 343  Q
    ||||| ||||||||| |||||| ||||||| ||| | || ||||||||||||||||||||||||||||||||| ||     ||||| |||| ||||||||    
T  11995353 agattatcacactcagatcaaa-cttatttaaaatacaaggtaaaaactaacacacaatagagaaaataaccacaaacaacaataagactaagacatttg 11995255  T
Q  344 caccatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatcta 443  Q
         ||| ||||||||||| ||||| ||| || ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  11995254 at---tctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta 11995158  T
Q  444 ggctttccaattaaaaa 460  Q
    |||||||||||||||||    
T  11995157 ggctttccaattaaaaa 11995141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 283 - 460
Target Start/End: Original strand, 12247609 - 12247789
Alignment:
Q  283 agaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccat------cttattcatggttggaccattgtttct 376  Q
    |||| ||||||||||||||||||||||||||||||||| || || |   ||| ||||||  ||||||      || ||||||||||| ||||| ||| ||    
T  12247609 agaaggtaaaaactaacacacaatagagaaaataaccacaacaaga---ctacgacattgccaccatttgattctgattcatggttgcaccatggttcct 12247705  T
Q  377 cctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaa 460  Q
     ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  12247706 actcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctaggctttccaattaaaaa 12247789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 32682495 - 32682431
Alignment:
Q  396 ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaa 460  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  32682495 ttcactcttctcttaggatgaccaccaattatcatcacaagccatctaggctttccaattaaaaa 32682431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 32682557 - 32682495
Alignment:
Q  280 aacagaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacattt 342  Q
    |||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||    
T  32682557 aacagaaagtaaaaactaacacacaatagagaaaataagcacaacaataagactatgacattt 32682495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 271 - 460
Target Start/End: Original strand, 11117294 - 11117490
Alignment:
Q  271 cttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc------atggttg 363  Q
    |||||||||||||||||||||||| | ||||| |||  |||||| |||| |  | ||||||||||||||||||||||||||| ||||      ||| |||    
T  11117294 cttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatctgattctgattcatgtttg 11117393  T
Q  364 gaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaa 460  Q
     |||||     ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||    
T  11117394 aaccatgtgcgctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaa 11117490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 460
Target Start/End: Original strand, 8522379 - 8522456
Alignment:
Q  383 tcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaa 460  Q
    |||||| || || |||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||    
T  8522379 tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaa 8522456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 353 - 460
Target Start/End: Complemental strand, 25523881 - 25523774
Alignment:
Q  353 attcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttcca 452  Q
    |||||||| || |||||  || ||||||| |||||| ||  | |||||  |||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  25523881 attcatggctgtaccatgattcctcctcattcttgtcctttttttcacctttctcttaggctgaccgccaaatatcatcacaagccatctaggctttcca 25523782  T
Q  453 attaaaaa 460  Q
    | ||||||    
T  25523781 actaaaaa 25523774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 30021068 - 30021105
Alignment:
Q  271 cttattttaaacagaaagtaaaaactaacacacaatag 308  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  30021068 cttattttaaatagaaggtaaaaactaacacacaatag 30021105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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