View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_18 (Length: 453)
Name: NF11581_low_18
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_18 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 4 - 435
Target Start/End: Complemental strand, 1313745 - 1313314
Alignment:
| Q |
4 |
accttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaacattgctatagtgcttggtgttgttttaagcattgatgctaacatg |
103 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1313745 |
accttctagttcccagggaaaaggagctattgtaatctggttcgcactttgaaacattgctatagtgcttggtgttgttttaagcattgatgctaacatg |
1313646 |
T |
|
| Q |
104 |
atttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaagaaggaggtaaactcttgccaggtt |
203 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1313645 |
atttgttcaggagagttcgtccgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaagaaggaggtaaactcttgccaggtt |
1313546 |
T |
|
| Q |
204 |
gatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtggtggttgtggagtctgttacgaaggcaaaggtta |
303 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1313545 |
gatctggagaagcagctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtgatggttgtggagtctgttacgaaggcaaaggtta |
1313446 |
T |
|
| Q |
304 |
ttcagagataccttggtgatatgtacgaagtcttgccaagctatggtcatgtaagagacttggcttcaaggtctgaatctgtgcgacccgacgacgattt |
403 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1313445 |
ttcagagataccttggtgatatgtatgaagtcttgccaagctatggtcatgtaagagacttggcttcaaggtctgaatctgtgcgacccgacgacgattt |
1313346 |
T |
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| Q |
404 |
tagtatggtgtgggaagttccctcatctgcct |
435 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
1313345 |
tagtatggtgtgggaagttccctcatctgcct |
1313314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 3 - 435
Target Start/End: Complemental strand, 1294735 - 1294303
Alignment:
| Q |
3 |
aaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaacattgctatagtgcttggtgttgttttaagcattgatgctaacat |
102 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1294735 |
aaccttctagttcctagggaaaaggagctattgtaatgtggttcgcactttgaaacattgctatagtgcttggtgttgttttaagcattgatgttaacat |
1294636 |
T |
|
| Q |
103 |
gatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaagaaggaggtaaactcttgccaggt |
202 |
Q |
| |
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| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
1294635 |
ggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggtcgaaaaagaaggaggtaaactcttgccaggt |
1294536 |
T |
|
| Q |
203 |
tgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtggtggttgtggagtctgttacgaaggcaaaggtt |
302 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
1294535 |
tgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtgatggttgtggagtctgttacgaaggcgaaggtt |
1294436 |
T |
|
| Q |
303 |
attcagagataccttggtgatatgtacgaagtcttgccaagctatggtcatgtaagagacttggcttcaaggtctgaatctgtgcgacccgacgacgatt |
402 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |
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| T |
1294435 |
attcagagataccttggtgatatgtatgaagtcttgccaagctatggtcatgtaagagacttggcttcgaggtctggatctgtgcgacccgacgatgatt |
1294336 |
T |
|
| Q |
403 |
ttagtatggtgtgggaagttccctcatctgcct |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
1294335 |
ttagtatggtgtgggaagttccctcatctgcct |
1294303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 3 - 435
Target Start/End: Complemental strand, 22645 - 22213
Alignment:
| Q |
3 |
aaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaacattgctatagtgcttggtgttgttttaagcattgatgctaacat |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22645 |
aaccttctagttcctagggaaaaggagctattgtaatgtggttcgcactttgaaacattgctatagtgcttggtgttgttttaagcattgatgttaacat |
22546 |
T |
|
| Q |
103 |
gatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaagaaggaggtaaactcttgccaggt |
202 |
Q |
| |
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| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
22545 |
ggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggtcgaaaaagaaggaggtaaactcttgccaggt |
22446 |
T |
|
| Q |
203 |
tgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtggtggttgtggagtctgttacgaaggcaaaggtt |
302 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22445 |
tgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtgatggttgtggagtctgttacgaaggcaaaggtt |
22346 |
T |
|
| Q |
303 |
attcagagataccttggtgatatgtacgaagtcttgccaagctatggtcatgtaagagacttggcttcaaggtctgaatctgtgcgacccgacgacgatt |
402 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22345 |
attcagagataccttggtgatatgtatgaagtcttgccaagctatggtcatgtaagagacttggcttcaaggtctgaatctgtgcgacccgacgacgatt |
22246 |
T |
|
| Q |
403 |
ttagtatggtgtgggaagttccctcatctgcct |
435 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
22245 |
ttagtatggtgtgggaagttccctcatctgcct |
22213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 27946993 - 27946936
Alignment:
| Q |
227 |
atttacgggaaaaccattgtatccacccgtgggaaagtctgtggtggttgtggagtct |
284 |
Q |
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||||||||||||| || | |||||||| |||||||| ||||||||||||||||||||| |
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| T |
27946993 |
atttacgggaaaatcactttatccaccggtgggaaaatctgtggtggttgtggagtct |
27946936 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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