View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_19 (Length: 442)
Name: NF11581_low_19
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 36889358 - 36889766
Alignment:
| Q |
18 |
gcatgtagccattgatttagacgaagaaattgttgttaaagagcttgtgaatgcaattttaacacataatgtggaagttagtgatgaaagagttgaagca |
117 |
Q |
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| T |
36889358 |
gcatgtagccattgatttagacgaagaaattgttgttaaagagcttgtgaatgcaattttaacacataatgtggaagttagtgatgaaagagttgaagca |
36889457 |
T |
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| Q |
118 |
ttggaaatggagaatgaacgtggagacacaccattgcattttgcagcatcaagaggttttgcaagaatatgtaagtgtattattgggattaataatgaga |
217 |
Q |
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| T |
36889458 |
ttggaaatggagaatgaacgtggagacacaccattgcattttgcagcatcaagaggttttgcaagaatatgtaagtgtattattgggattaacaatgaga |
36889557 |
T |
|
| Q |
218 |
ggatatatttgttgagtcgtaaaaataagcatggtgagacacctctttttcaagctgctattaattggagaaaacaaacatttgcttatcttgctcatat |
317 |
Q |
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| T |
36889558 |
ggatatatttgttgagtcgtaaaaataagcatggtgagacacctctttttcaagctgctattaattggagaaaacaaacatttgcttatcttgctcatat |
36889657 |
T |
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| Q |
318 |
ttccaaagagatagtcactttgcaagatcttgtaagagaagatggtgacagtattcttcataccgcgattcgaggagaatattttggtaaattatatttc |
417 |
Q |
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| T |
36889658 |
ttccaaagagatagtcactttgcaagatcttgtaagagaagatggtgacagtattcttcataccgcgattcgaggagaatattttggtaaattatatttc |
36889757 |
T |
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| Q |
418 |
atatgtttc |
426 |
Q |
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| T |
36889758 |
ctatgtttc |
36889766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 110 - 412
Target Start/End: Original strand, 36877294 - 36877596
Alignment:
| Q |
110 |
ttgaagcattggaaatggagaatgaacgtggagacacaccattgcattttgcagcatcaagaggttttgcaagaatatgtaagtgtattattgggattaa |
209 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| | | | |
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| T |
36877294 |
ttgaggcattggaaatggtgaatgaacgtggagacacaccattgcattttgcagcatcaaggggttttgcaagaatatgcaactgtataattggtagtga |
36877393 |
T |
|
| Q |
210 |
taatgagaggatatatttgttgagtcgtaaaaataagcatggtgagacacctctttttcaagctgctattaattggagaaaacaaacatttgcttatctt |
309 |
Q |
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| T |
36877394 |
gaatgagaggatatatttgttgagttgtaaaaataaaaatggtgagacacctttttttcaagctgctgttaattggagaaaacaagcttttgcttatctt |
36877493 |
T |
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| Q |
310 |
gctcatatttccaaagagatagtcactttgcaagatcttgtaagagaagatggtgacagtattcttcataccgcgattcgaggagaatattttggtaaat |
409 |
Q |
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| T |
36877494 |
gctcatatttccaaagggatggtcaatttgcaagaacttgtacgaaatgatggtgatagtattcttcacactgctatccgaggagaatatttcggtaaat |
36877593 |
T |
|
| Q |
410 |
tat |
412 |
Q |
| |
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||| |
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| T |
36877594 |
tat |
36877596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 115 - 344
Target Start/End: Original strand, 36896266 - 36896495
Alignment:
| Q |
115 |
gcattggaaatggagaatgaacgtggagacacaccattgcattttgcagcatcaagaggttttgcaagaatatgtaagtgtattattgggattaataatg |
214 |
Q |
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| T |
36896266 |
gcattggaaattgggaatgaacatggagacacaccattgcattttgcagcatcaaggggttttgcaagaatatgtaagtgtataattggtagtgagaatg |
36896365 |
T |
|
| Q |
215 |
agaggatatatttgttgagtcgtaaaaataagcatggtgagacacctctttttcaagctgctattaattggagaaaacaaacatttgcttatcttgctca |
314 |
Q |
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| T |
36896366 |
agaggatatatttgttgagttgtaaaaataaaaatggcgagacacctttttttcaagctgctgttaattggagaaaacaagcttttgcttatcttgctca |
36896465 |
T |
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| Q |
315 |
tatttccaaagagatagtcactttgcaaga |
344 |
Q |
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| T |
36896466 |
tatttccaaagggatggtcaatttgcaaga |
36896495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 36877220 - 36877289
Alignment:
| Q |
18 |
gcatgtagccattgatttagacgaagaaattgttgttaaagagcttgtgaatgcaattttaacacataat |
87 |
Q |
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| T |
36877220 |
gcatgtagccatagatttggacgaagaagatgttgtcaatgagcttgtgaatgcaattttaacacataat |
36877289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 36896188 - 36896248
Alignment:
| Q |
19 |
catgtagccattgatttagacgaagaaattgttgttaaagagcttgtgaatgcaattttaa |
79 |
Q |
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| T |
36896188 |
catgtagccatagatttagacgaagaattttttgtcgaaaagcttgtgcatgcaattttaa |
36896248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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