View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11581_low_2 (Length: 1025)

Name: NF11581_low_2
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11581_low_2
NF11581_low_2
[»] chr1 (24 HSPs)
chr1 (252-1011)||(36833651-36834411)
chr1 (254-413)||(35050322-35050481)
chr1 (4-120)||(18431442-18431558)
chr1 (254-424)||(27332956-27333126)
chr1 (251-425)||(9411732-9411907)
chr1 (251-425)||(16129978-16130153)
chr1 (244-425)||(16130520-16130703)
chr1 (251-425)||(27654610-27654783)
chr1 (251-413)||(5800451-5800613)
chr1 (251-425)||(40988083-40988257)
chr1 (254-425)||(1553721-1553892)
chr1 (4-120)||(22788197-22788310)
chr1 (244-424)||(45192579-45192760)
chr1 (254-424)||(30222698-30222868)
chr1 (244-413)||(13879061-13879219)
chr1 (251-357)||(34546723-34546826)
chr1 (254-347)||(27846418-27846511)
chr1 (254-354)||(4813769-4813869)
chr1 (257-354)||(11907954-11908049)
chr1 (251-345)||(23933332-23933427)
chr1 (307-413)||(35121187-35121293)
chr1 (241-311)||(35428419-35428494)
chr1 (20-88)||(1014321-1014386)
chr1 (251-312)||(41957262-41957323)
[»] chr4 (15 HSPs)
chr4 (246-425)||(50150325-50150505)
chr4 (251-413)||(30537645-30537807)
chr4 (243-424)||(43034135-43034317)
chr4 (251-425)||(26877167-26877342)
chr4 (251-424)||(782798-782972)
chr4 (251-424)||(36187324-36187498)
chr4 (244-423)||(25934347-25934526)
chr4 (251-425)||(27627757-27627930)
chr4 (244-418)||(3067740-3067914)
chr4 (4-95)||(8903451-8903542)
chr4 (4-95)||(45067541-45067632)
chr4 (254-373)||(33313287-33313406)
chr4 (251-339)||(56551489-56551573)
chr4 (258-333)||(29989703-29989779)
chr4 (265-333)||(44538441-44538509)
[»] chr7 (12 HSPs)
chr7 (243-425)||(24989718-24989901)
chr7 (254-424)||(8417664-8417834)
chr7 (251-375)||(7568193-7568317)
chr7 (4-120)||(46437506-46437622)
chr7 (251-413)||(23319990-23320153)
chr7 (251-425)||(48394177-48394350)
chr7 (251-413)||(18674519-18674682)
chr7 (251-424)||(48390334-48390508)
chr7 (241-357)||(41851018-41851135)
chr7 (243-367)||(45062518-45062643)
chr7 (279-335)||(965166-965222)
chr7 (20-88)||(39780492-39780557)
[»] chr3 (23 HSPs)
chr3 (243-425)||(54747995-54748178)
chr3 (243-425)||(25095992-25096175)
chr3 (254-425)||(26848177-26848348)
chr3 (251-425)||(35613033-35613208)
chr3 (243-425)||(25313368-25313552)
chr3 (244-425)||(50834011-50834194)
chr3 (244-425)||(50841659-50841842)
chr3 (254-413)||(22515655-22515815)
chr3 (251-375)||(48905648-48905772)
chr3 (251-413)||(20922788-20922951)
chr3 (251-425)||(46320438-46320613)
chr3 (251-424)||(23026300-23026474)
chr3 (4-120)||(26555669-26555782)
chr3 (251-375)||(9663920-9664041)
chr3 (251-425)||(49794971-49795147)
chr3 (4-120)||(52118488-52118601)
chr3 (20-88)||(26905744-26905809)
chr3 (20-88)||(36615231-36615296)
chr3 (252-333)||(33280335-33280416)
chr3 (20-88)||(25069526-25069591)
chr3 (256-329)||(32619323-32619396)
chr3 (20-88)||(28211463-28211528)
chr3 (286-331)||(31612861-31612906)
[»] chr5 (14 HSPs)
chr5 (252-425)||(33314333-33314506)
chr5 (254-425)||(21262915-21263086)
chr5 (251-424)||(40385249-40385425)
chr5 (251-425)||(3097565-3097740)
chr5 (251-413)||(24868483-24868646)
chr5 (251-425)||(41174675-41174849)
chr5 (4-79)||(424572-424647)
chr5 (251-346)||(4237936-4238031)
chr5 (4-79)||(18113567-18113642)
chr5 (20-88)||(25634224-25634289)
chr5 (26-95)||(17074816-17074885)
chr5 (252-354)||(2934903-2935006)
chr5 (289-335)||(2355977-2356023)
chr5 (289-335)||(2356062-2356108)
[»] chr2 (21 HSPs)
chr2 (243-425)||(10448723-10448906)
chr2 (243-425)||(11964155-11964338)
chr2 (244-413)||(39778658-39778829)
chr2 (251-424)||(36191590-36191763)
chr2 (251-425)||(19926801-19926974)
chr2 (251-425)||(10728307-10728482)
chr2 (254-424)||(21345098-21345265)
chr2 (246-413)||(22066384-22066552)
chr2 (244-423)||(41435615-41435795)
chr2 (238-423)||(13693530-13693716)
chr2 (254-418)||(25186950-25187114)
chr2 (251-424)||(42993820-42993994)
chr2 (251-375)||(7105608-7105732)
chr2 (16-120)||(16916187-16916291)
chr2 (251-418)||(28830969-28831137)
chr2 (251-413)||(10700238-10700401)
chr2 (291-425)||(41462670-41462805)
chr2 (251-317)||(16621989-16622053)
chr2 (257-324)||(45695655-45695721)
chr2 (20-88)||(4076365-4076430)
chr2 (212-246)||(16916383-16916417)
[»] chr8 (15 HSPs)
chr8 (251-424)||(32305713-32305887)
chr8 (240-418)||(8669746-8669924)
chr8 (243-424)||(13882091-13882272)
chr8 (251-424)||(8106899-8107072)
chr8 (254-418)||(29226288-29226451)
chr8 (250-413)||(35634804-35634968)
chr8 (4-120)||(28535356-28535469)
chr8 (4-95)||(11463698-11463789)
chr8 (254-413)||(37533783-37533942)
chr8 (243-357)||(42569975-42570090)
chr8 (257-345)||(36741715-36741806)
chr8 (20-88)||(45483649-45483714)
chr8 (251-354)||(17855424-17855527)
chr8 (261-313)||(31598688-31598740)
chr8 (260-315)||(32026755-32026810)
[»] chr6 (7 HSPs)
chr6 (250-425)||(24338025-24338201)
chr6 (244-425)||(1365649-1365832)
chr6 (4-120)||(5013889-5014005)
chr6 (251-418)||(7243430-7243598)
chr6 (4-120)||(16693162-16693275)
chr6 (20-88)||(18819506-18819571)
chr6 (20-88)||(24904412-24904477)
[»] scaffold0067 (1 HSPs)
scaffold0067 (254-357)||(6776-6879)
[»] scaffold0008 (1 HSPs)
scaffold0008 (279-418)||(258358-258498)
[»] scaffold0057 (2 HSPs)
scaffold0057 (251-350)||(30490-30589)
scaffold0057 (251-317)||(30844-30906)


Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 252 - 1011
Target Start/End: Complemental strand, 36834411 - 36833651
Alignment:
Q  252 cctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactta 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| |  |||||||||||||||||||||||||||||     
T  36834411 cctaaattaattactctttattccaccaacttacttacttttaatattctctt--ataataaataagggtacaaatgaaatttagcttcaaacatacttg 36834314  T
Q  352 aaacttaatcgatcttcttataaagagaaccaaaa-aatatttcacttttgtttttaataaaagggacaggagggtatttaagctaaatcttgtgaaaac 450  Q
    ||| |||||| || |||||||||| ||||| |||| ||||||||||||||||||  |||||||| ||   || ||||||||||||||||||| |||||||    
T  36834313 aaatttaatcaattttcttataaaaagaacaaaaataatatttcacttttgtttcgaataaaagagatcagaaggtatttaagctaaatcttatgaaaac 36834214  T
Q  451 taacttaatatgcgtatatataatatacccacctctatcttttaaaattgacaatttaatacatttatgaaatatgttcattcaaaatggttcatgttca 550  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  36834213 taacttaatatacgtatatataatatacccacctctatcttttaaaattgacaatttaatacatttattaaatatgttcattcaaaatagttcatgttca 36834114  T
Q  551 tcttctaactcatgtcatcagatgctat--gacattacaatatgtgacggtctaatttacaaatatatcacatgggttctcttctaacttatatcattcg 648  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36834113 tcttctaactcatgtcatcagatgctatatgacattaaaatatgtgacagtctaatttacaaatatatcacatgggttctcttctaacttatatcattag 36834014  T
Q  649 agactgtgacatgacaaacacatcacattgtaagtttttcaggtatatcaacttactaaggactaattagtttattcctaaaacaaagggggactaatta 748  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36834013 agactgtgacatgacaaacacattacattgtaagtttgtcaggtgtatcaacttactaaggactaattagcttattcctaaaacaaagggggactaatta 36833914  T
Q  749 gcctataatattttgaaaatgttatggataaacttgtttctacacacatgtatatatagtccactacattcgaaccacacgacacgtcaacacctctttg 848  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36833913 gcctataatattttgaaaatgttatggataaattagtttctacacacatgtatatatagtccactacattcgaaccacacgacacgtcaacacctctttg 36833814  T
Q  849 ccaatgtctaacacgtggcatattcatatccttataagaacttctttgataattaagtgccatgctacacgtgcaatatgttcaagtgtctcactacgca 948  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36833813 ccaatgtctaacacgtggcatattcatatccttataagaacttctttgataattaagtgccatgctacacgtgcaatatgttcaagtgtctcactacgca 36833714  T
Q  949 ctatacgtttaaccgcacactttgttcatcatcaagatcactaataaccatatccactttgtg 1011  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36833713 ctatacgtttaaccgcacactttgttcatcatcaagatcactaataaccatatccactttgtg 36833651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 254 - 413
Target Start/End: Original strand, 35050322 - 35050481
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||    
T  35050322 taaattaattactctttatttcatcaacttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcagacatacttgaa 35050421  T
Q  354 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
    |||| ||||||||| ||||||| ||||||||||||  | |||||||||||| ||||||||    
T  35050422 acttgatcgatctttttataaaaagaaccaaaaaaattctcacttttgtttctaataaaa 35050481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 18431442 - 18431558
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaagaaagacgat 103  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18431442 actagatttgaagaaggagtgaagagagaaaatgatgttgctgactgatgagagtggaagaaggagaggtttgtttgtttgttgtgagaagaaagacgat 18431541  T
Q  104 tgtgaattgtgatttgt 120  Q
    |||||||||||||||||    
T  18431542 tgtgaattgtgatttgt 18431558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 254 - 424
Target Start/End: Original strand, 27332956 - 27333126
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||||||||||||    
T  27332956 taaattaattactctttattccattaacttacttacttttaatattttctctcataatcaataagggtacaaatgaaatttagcttcaaacatacttaaa 27333055  T
Q  354 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
    |||| ||| ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| |||||    
T  27333056 acttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagg 27333126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 251 - 425
Target Start/End: Complemental strand, 9411907 - 9411732
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||| ||||||    
T  9411907 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaagtgaaatttaacttcaaatatactt 9411808  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
     ||||||  || ||  |||||||||| || |||||||||  |||||||||||||| |||||||| |||| ||||||    
T  9411807 gaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaatggaccggaggg 9411732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 251 - 425
Target Start/End: Original strand, 16129978 - 16130153
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  16129978 ccctaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 16130077  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
     ||||||  || ||  |||||||||| || ||||||   | |||||||||||||| |||||||| |||| ||||||    
T  16130078 gaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccggaggg 16130153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 244 - 425
Target Start/End: Original strand, 16130520 - 16130703
Alignment:
Q  244 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 342  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  16130520 atgaatacccttaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 16130619  T
Q  343 acatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||||||| ||||||  || ||  |||||||||| || ||||||   | |||||||||||||| |||||||| |||| ||||||    
T  16130620 acatacttgaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccggaggg 16130703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 251 - 425
Target Start/End: Complemental strand, 27654783 - 27654610
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| | ||||||||||||||| ||||||| ||||||    
T  27654783 ccctaaattaattactctttattccaccaacttacttacttttaatattc--tctcataataaataagggcacaaatgaaatttaacttcaaagatactt 27654686  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    ||||||| ||| ||  |||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  27654685 aaaacttgatcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 27654610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 251 - 413
Target Start/End: Original strand, 5800451 - 5800613
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  5800451 ccctaaattaatttctctttattccactaacttatttacttttaattttctctctcataataaataaggacacaaatgaaatttatcttcaaacatactt 5800550  T
Q  351 aaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
     ||||||  || ||||||||||||| || |||||||||  |  ||||||||||| ||||||||    
T  5800551 gaaacttggtcaatcttcttataaaaaggaccaaaaaaattcccacttttgtttctaataaaa 5800613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 251 - 425
Target Start/End: Original strand, 40988083 - 40988257
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  40988083 ccctaaattaattactctttattccgccaacttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttagtttcaaacatactt 40988180  T
Q  351 aaaacttaatcgat-cttcttataaagagaacc-aaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||||||  || ||  |||||||||| || ||| |||||| | ||||||||||||| |||||||| |||| ||||||    
T  40988181 aaaacttggtcaatatttcttataaaaaggaccaaaaaaaaaattcacttttgtttctaataaaaaggaccggaggg 40988257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 254 - 425
Target Start/End: Complemental strand, 1553892 - 1553721
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||    
T  1553892 taaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaa 1553793  T
Q  354 acttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    | || ||| || ||||||||||| || |||| ||||  | ||| |||||||| |||||||| |||| ||||||    
T  1553792 atttgatcaatacttcttataaaaaggaccacaaaaattctca-ttttgtttctaataaaaaggaccggaggg 1553721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 22788197 - 22788310
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaagaaagacgat 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||||||||| |||||||| |||    
T  22788197 actagaattgaagaaggagtgaagagagaaaatgatgctgctgactgatgagagtg---gaaggagaggtttgtttgtttgttgtgagaagaaagaagat 22788293  T
Q  104 tgtgaattgtgatttgt 120  Q
    |||||||||||||||||    
T  22788294 tgtgaattgtgatttgt 22788310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 244 - 424
Target Start/End: Original strand, 45192579 - 45192760
Alignment:
Q  244 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 342  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||  ||||||||||| |||||| | ||    
T  45192579 atgaatacccttaaattaattactctttattccatcaacttacttatttttaatattctgtctcataattaataagaacacaaatgaattttagcataaa 45192678  T
Q  343 acatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
    | ||| |  |||||||||| ||||||||||||| || | |||||||  | |||||||||||| |||||||| |||| |||||    
T  45192679 aaatattagaaacttaatcaatcttcttataaaaaggatcaaaaaaattctcacttttgtttctaataaaaaggaccggagg 45192760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 254 - 424
Target Start/End: Complemental strand, 30222868 - 30222698
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||  ||||||||||| |||||| ||||||||| || ||    
T  30222868 taaattaattactctttaatccatcaacttacttacttttaatattctctttcataatcaataagaacacaaatgaattttagcatcaaacatatttgaa 30222769  T
Q  354 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
    |||| ||| ||||||||||||| |  | |||||||  | ||| |||||||| |||||||| |||| |||||    
T  30222768 acttgatcaatcttcttataaaaatgatcaaaaaaattctcatttttgtttctaataaaaaggaccggagg 30222698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 244 - 413
Target Start/End: Original strand, 13879061 - 13879219
Alignment:
Q  244 atgaataccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaa 343  Q
    ||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||| | ||||||||||||||||           
T  13879061 atgaataccttaaattaattactctttcttccaccaacttatttactattaatattctatctcataataaataagggcacaaatgaaatttag------- 13879153  T
Q  344 catacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
        ||| |||||| ||| |||||||| |||| || ||||||||| ||||||||||||||| ||||||||    
T  13879154 ----ctttaaacttgatcaatcttcttgtaaaaaggaccaaaaaaaatttcacttttgtttctaataaaa 13879219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 251 - 357
Target Start/End: Complemental strand, 34546826 - 34546723
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| | || |||||||| ||||||||||||||||||    
T  34546826 ccctaaattaattactctttattccaccaacttacttacttttaatat--tttctcataataaataagggcagaaatgaaa-ttagcttcaaacatactt 34546730  T
Q  351 aaaactt 357  Q
    |||||||    
T  34546729 aaaactt 34546723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 27846511 - 27846418
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacata 347  Q
    ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||||||||||| |||||||||||    
T  27846511 taaattaattactatctattccaccaacttacttacttttaatattatctctcataataaataagggtacaaatgaaatttaacttcaaacata 27846418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 4813769 - 4813869
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||||||||| | |||||||||||||||| ||||| || |||||||    
T  4813769 taaattaattacttttcattccaccaacttacttacttttaatattccttctcataataaataagggcacaaatgaaatttagtttcaagcacacttaaa 4813868  T
Q  354 a 354  Q
    |    
T  4813869 a 4813869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 257 - 354
Target Start/End: Complemental strand, 11908049 - 11907954
Alignment:
Q  257 attaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaaa 354  Q
    ||||||||||||| |||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||  |||| ||||||||    
T  11908049 attaattactcttgattccaccaacttatttatttttaata--ctctctcataataaataaagacacaaatgaaatttagttttcaacacacttaaaa 11907954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 23933332 - 23933427
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttactttt-aatattctctctcataataaataaagacacaaatgaaatttagcttcaaaca 345  Q
    ||||||||||||||||||| |||| |||||||| |||| |||| |||||||||||  ||||||||||| | ||||||||||||||| |||||||||    
T  23933332 ccctaaattaattactcttgattctaccaactttcttattttttaatattctctcatataataaataagggcacaaatgaaatttaacttcaaaca 23933427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 307 - 413
Target Start/End: Complemental strand, 35121293 - 35121187
Alignment:
Q  307 ataataaataaagacacaaatgaaatttagcttcaaacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgttttt 406  Q
    ||||||||||| | |||||||||||||| ||||||||||||||| ||||||  || ||||||||||||| || |||||||||  |  ||| ||||||| |    
T  35121293 ataataaataagggcacaaatgaaattttgcttcaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattcgcacatttgtttct 35121194  T
Q  407 aataaaa 413  Q
    |||||||    
T  35121193 aataaaa 35121187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 35428494 - 35428419
Alignment:
Q  241 tttatgaataccct-aaattaattactctttattccaccaa----cttacttacttttaatattctctctcataat 311  Q
    |||||||||||||| |||||||||||||||||||||| |||    |||||||||||||||| ||||||||||||||    
T  35428494 tttatgaatacccttaaattaattactctttattccatcaatcaacttacttacttttaattttctctctcataat 35428419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 1014386 - 1014321
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| || |||| |||||| |||||||   ||||||||||||||||||||||    
T  1014386 gagtgaagagagaaaattatgttgttgaccgatgagagtggaag---gagaggtttgtttgtttgttgt 1014321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 41957262 - 41957323
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataata 312  Q
    ||||| ||||||||||||| ||| ||||||   |||||||||||||||||| ||||||||||    
T  41957262 ccctatattaattactcttgattacaccaaaagacttacttttaatattctttctcataata 41957323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 1e-56; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 246 - 425
Target Start/End: Original strand, 50150325 - 50150505
Alignment:
Q  246 gaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaac 344  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  50150325 gaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcaaac 50150424  T
Q  345 atacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    ||||||||||||| ||| ||||||||||||| || |||||||||  | || ||||||||| |||||||| |||| ||||||    
T  50150425 atacttaaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcccttttgtttctaataaaaaggaccggaggg 50150505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 251 - 413
Target Start/End: Original strand, 30537645 - 30537807
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  30537645 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 30537744  T
Q  351 aaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
     ||||||  || ||||||||||||| || || |||||| || |||||||||||| ||| ||||    
T  30537745 gaaacttggtcaatcttcttataaaaaggacaaaaaaaaatctcacttttgtttctaacaaaa 30537807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 243 - 424
Target Start/End: Original strand, 43034135 - 43034317
Alignment:
Q  243 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 341  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  43034135 tatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 43034234  T
Q  342 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
    |||||| || |||||| ||| ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| |||||    
T  43034235 aacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagg 43034317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 251 - 425
Target Start/End: Complemental strand, 26877342 - 26877167
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26877342 ccctaaattaattactctttattccaccaacttacttacttttaatattctatctcataataaataaggacacaaatgaaatttagcttcaaacatactt 26877243  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||| ||  || ||  |||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  26877242 aaaatttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 26877167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 251 - 424
Target Start/End: Complemental strand, 782972 - 782798
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  782972 ccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaaagaaatttagcttcaaacatactt 782873  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
     ||||||  || ||  |||||||||| || || |||||| || |||||||||||| |||||||| |||| |||||    
T  782872 gaaacttggtcaatatttcttataaaaaggacaaaaaaaaatatcacttttgtttctaataaaaaggaccggagg 782798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 251 - 424
Target Start/End: Complemental strand, 36187498 - 36187324
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||    
T  36187498 ccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaatatactt 36187399  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
     ||||||  |  ||  |||||||||| || ||||||||| | ||||||||||||| |||||||| |||| |||||    
T  36187398 gaaacttggttaatatttcttataaaaaggaccaaaaaaaaattcacttttgtttctaataaaaaggaccggagg 36187324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 244 - 423
Target Start/End: Complemental strand, 25934526 - 25934347
Alignment:
Q  244 atgaataccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaa 343  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||| ||||||| |||||||||||||||||||| | ||||||||||||||| |||||||    
T  25934526 atgaataccctaaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataagggcacaaatgaaatttatcttcaaa 25934427  T
Q  344 catacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggag 423  Q
    ||||||| ||||||  || ||||||||||||| || || ||||||  | |||||||||||| |||||||| |||| ||||    
T  25934426 catacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggag 25934347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 251 - 425
Target Start/End: Complemental strand, 27627930 - 27627757
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  27627930 ccctaaattaattactctttattccaccaacttacttacttttaatattc--tctcataataaataagggcacaaatgaaatttagcttcaaacatactt 27627833  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
     ||||||  || ||  |||||||||| || | |||||||  || ||||||||||| |||||||| |||| ||||||    
T  27627832 gaaacttggtcaatatttcttataaaaaggatcaaaaaaatttccacttttgtttctaataaaaaggaccggaggg 27627757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 244 - 418
Target Start/End: Complemental strand, 3067914 - 3067740
Alignment:
Q  244 atgaatacc-ctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 342  Q
    ||||||||| |||||||||||  ||||||||| || |||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  3067914 atgaatacctctaaattaattcttctttattctactaacttatttacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaa 3067815  T
Q  343 acatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 418  Q
    |||||||| ||||||  || ||||||||||||| || || ||||||  | |||||||| ||| |||||||| ||||    
T  3067814 acatacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaattctcactttt-tttctaataaaaaggac 3067740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 8903542 - 8903451
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaaga 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||| ||||    
T  8903542 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgctgagagtggaagaaggagagatttgtttatttgttgtgagaaga 8903451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 45067541 - 45067632
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaaga 95  Q
    |||||||||||| ||||||||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||||||||| ||||    
T  45067541 actagatttgaaaaaggagtgacgagagaaaatgatgttgctgactgctgagagtggaagaaggagaggtttgtttgcttgttgtgagaaga 45067632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 254 - 373
Target Start/End: Complemental strand, 33313406 - 33313287
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    ||||||||||  |||||||||||| |||||| ||||||||||| |||||||||||||||||||| | ||||||| |||||||  || ||||||| |||||    
T  33313406 taaattaattcatctttattccactaacttatttacttttaattttctctctcataataaataagggcacaaataaaatttatatttaaacatatttaaa 33313307  T
Q  354 acttaatcgatcttcttata 373  Q
    ||||  |  |||||||||||    
T  33313306 acttggttaatcttcttata 33313287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 56551489 - 56551573
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagctt 339  Q
    ||||| ||||||||||||| ||||||| ||||| |||    ||| |||||||||| ||||||| ||| | |||||||||||||||||||    
T  56551489 ccctatattaattactcttaattccacaaacttgctt----ttagtattctctctaataataattaagggcacaaatgaaatttagctt 56551573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 29989779 - 29989703
Alignment:
Q  258 ttaattactctttattccaccaacttacttacttttaatattctctctca-taataaataaagacacaaatgaaatt 333  Q
    |||||||||||| |||| |  |||| ||||||||||||||||||||| || ||||||||||  |||||| |||||||    
T  29989779 ttaattactcttaattctaataactaacttacttttaatattctctcccagtaataaataagaacacaagtgaaatt 29989703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 44538441 - 44538509
Alignment:
Q  265 ctctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatt 333  Q
    ||||| |||||||||| ||| |||||||||||||||| | |||| ||||||||||  | ||||||||||    
T  44538441 ctcttaattccaccaatttatttacttttaatattctatttcatgataaataaaggtataaatgaaatt 44538509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 4e-56; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 243 - 425
Target Start/End: Complemental strand, 24989901 - 24989718
Alignment:
Q  243 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 341  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  24989901 tatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 24989802  T
Q  342 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    ||||||||| |||||| ||| ||||||| ||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  24989801 aacatacttgaaacttgatcaatcttctaataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 24989718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 254 - 424
Target Start/End: Complemental strand, 8417834 - 8417664
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||||||||| ||    
T  8417834 taaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttgaa 8417735  T
Q  354 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
    |||| ||| ||||||||||||| || || ||||||  | |||||||||||| |||||||| |||| |||||    
T  8417734 acttgatcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggagg 8417664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 251 - 375
Target Start/End: Original strand, 7568193 - 7568317
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||    
T  7568193 ccctaaattaattactctttattccaccaacttacttacttttaatattctctttcataataaataagggcacaaatgaaatttaccttcaaacatactt 7568292  T
Q  351 aaaacttaatcgatcttcttataaa 375  Q
     |||||| ||| |||||||||||||    
T  7568293 gaaacttgatcaatcttcttataaa 7568317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 46437622 - 46437506
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaagaaagacgat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  46437622 actagatttgaagaaggagtgaagagagaaaatgatgctgctgattgatgagagtggaagaatgagaggtttgtttgtttgttgtgagaagaaagacgat 46437523  T
Q  104 tgtgaattgtgatttgt 120  Q
    ||||||||||| |||||    
T  46437522 tgtgaattgtgttttgt 46437506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 251 - 413
Target Start/End: Original strand, 23319990 - 23320153
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  23319990 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 23320089  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
     ||||||  || ||  |||||||||| |  ||||| ||| || | | |||||||||||||||||    
T  23320090 gaaacttggtcaatatttcttataaaaatgaccaacaaaaatctaatttttgtttttaataaaa 23320153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 251 - 425
Target Start/End: Original strand, 48394177 - 48394350
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||| | |||||||||||||||| |||||||||||||    
T  48394177 ccctaaattaattactctttattccaccaacttacttacttttaatat--tctttcataataaataagggcacaaatgaaatttagtttcaaacatactt 48394274  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||||||  || ||  |||||||||| || || |||||| | ||||||||||||| |||||||| |||| ||||||    
T  48394275 aaaacttggtcaatatttcttataaaaaggacaaaaaaaaaattcacttttgtttctaataaaaaggaccggaggg 48394350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 251 - 413
Target Start/End: Complemental strand, 18674682 - 18674519
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||    
T  18674682 ccctaaattaattactctttattccaccaacttacttattttcaatattctctcttataataaataagggcacaaatgaaatttagcttcaaacatactt 18674583  T
Q  351 aaaacttaatcgatcttcttataaagagaac-caaaaaatatttcacttttgtttttaataaaa 413  Q
     ||||||  || || |||||||||| || ||  |||||| || |||||||||||| ||||||||    
T  18674582 gaaacttggtcaattttcttataaaaaggacaaaaaaaaaatctcacttttgtttctaataaaa 18674519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 251 - 424
Target Start/End: Original strand, 48390334 - 48390508
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||| | |||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  48390334 ccctaaattaattattttttatttcatcaacttacttacttttaatattctcactcataataaataaggacacaaatgaaatttagcttcaaacatactt 48390433  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
     ||||||  || ||  |||||||||| || |  |||||| | ||||||||||||| |||||||| |||| |||||    
T  48390434 gaaacttggtcaatatttcttataaaaaggataaaaaaaaaattcacttttgtttctaataaaaaggaccggagg 48390508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 41851018 - 41851135
Alignment:
Q  241 tttatgaataccc-taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagctt 339  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||    
T  41851018 tttatgaatacccctaaattaattactctttattccaccaactcacttacttttaatattctctctcataataaataagggtacaaatgaaatttagttt 41851117  T
Q  340 caaacatacttaaaactt 357  Q
    ||||||||||| ||||||    
T  41851118 caaacatacttgaaactt 41851135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 243 - 367
Target Start/End: Complemental strand, 45062643 - 45062518
Alignment:
Q  243 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 341  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || || | |||| |||||||||||||| |    
T  45062643 tatgaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaacaagggcacagatgaaatttagcttta 45062544  T
Q  342 aacatacttaaaacttaatcgatctt 367  Q
    |||||| || |||||| ||| |||||    
T  45062543 aacatatttgaaacttgatcaatctt 45062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 965166 - 965222
Alignment:
Q  279 aacttacttacttttaatattctctctcataataaataaagacacaaatgaaattta 335  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||| ||||||||    
T  965166 aacttacttacttttaatattctttctcataataaataagaacacaaacgaaattta 965222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 39780557 - 39780492
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| || ||||||||||| |||   ||||||||||||||||||||||||||    
T  39780557 gagtgaagagagaaaattatgttgttgactgatgagagtg---gaaggagaggtttgtttgtttgttgt 39780492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 4e-56; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 243 - 425
Target Start/End: Complemental strand, 54748178 - 54747995
Alignment:
Q  243 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 341  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  54748178 tatgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 54748079  T
Q  342 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    ||||||||| |||||| ||| ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  54748078 aacatacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 54747995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 243 - 425
Target Start/End: Original strand, 25095992 - 25096175
Alignment:
Q  243 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 341  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  25095992 tatgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 25096091  T
Q  342 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    ||||||||| ||| || ||| ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  25096092 aacatacttgaaatttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 25096175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 254 - 425
Target Start/End: Original strand, 26848177 - 26848348
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||||||||||| ||    
T  26848177 taaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaaagaaatttagcttcaaacatacttgaa 26848276  T
Q  354 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||| ||| ||||||||||||| |  |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  26848277 acttgatcaatcttcttataaaaatgaccaaaaaaattctcacttttgtttataataaaaaggaccggaggg 26848348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 251 - 425
Target Start/End: Original strand, 35613033 - 35613208
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  35613033 ccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 35613132  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
     ||||||  || ||  |||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  35613133 gaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 35613208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 243 - 425
Target Start/End: Complemental strand, 25313552 - 25313368
Alignment:
Q  243 tatgaataccc-taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 341  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  25313552 tatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 25313453  T
Q  342 aacatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    ||||||||| ||||||  || ||  |||||||||| || ||| |||||  | |||||||||||| |||||||| |||| ||||||    
T  25313452 aacatacttgaaacttggtcaatatttcttataaaaaggacccaaaaaattctcacttttgtttctaataaaaaggaccggaggg 25313368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 244 - 425
Target Start/End: Complemental strand, 50834194 - 50834011
Alignment:
Q  244 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 342  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  50834194 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaa 50834095  T
Q  343 acatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||||||| ||||||  || ||  |||||||||| || |||||||||  | |||||||||||  |||||||| |||| ||||||    
T  50834094 acatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggaggg 50834011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 244 - 425
Target Start/End: Original strand, 50841659 - 50841842
Alignment:
Q  244 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 342  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  50841659 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaa 50841758  T
Q  343 acatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||||||| ||||||  || ||  |||||||||| || |||||||||  | |||||||||||  |||||||| |||| ||||||    
T  50841759 acatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggaggg 50841842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 254 - 413
Target Start/End: Complemental strand, 22515815 - 22515655
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||    
T  22515815 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaa 22515716  T
Q  354 acttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
    ||||  || ||  |||||||||| || ||||||||  |||||| |||||||| ||||||||    
T  22515715 acttggtcaatatttcttataaaaaggaccaaaaagaatttcagttttgtttctaataaaa 22515655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 251 - 375
Target Start/End: Original strand, 48905648 - 48905772
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  48905648 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttaccttcaaacatactt 48905747  T
Q  351 aaaacttaatcgatcttcttataaa 375  Q
     ||||||  || |||||||||||||    
T  48905748 gaaacttggtcaatcttcttataaa 48905772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 251 - 413
Target Start/End: Original strand, 20922788 - 20922951
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||  ||||||    
T  20922788 ccctaaattaattattttttattccaccaacttacttacttttaatattctctctcataataaataagagcacaaatgaaatttagcttcaagaatactt 20922887  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
     ||||||  || ||  |||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  20922888 gaaacttggtcaatatttcttataaaaagaaccaaaaaaaatttcacttttgtttctaataaaa 20922951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 251 - 425
Target Start/End: Complemental strand, 46320613 - 46320438
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||| ||||||||||||||    
T  46320613 ccctaaattaattactctttatttcaccaacttacttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatactt 46320514  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||||||  || ||  |||||||||| || ||| |||||  | |||||||||||| |||||||| |||| ||||||    
T  46320513 aaaacttggtcaatatttcttataaaaaggacctaaaaaattctcacttttgtttctaataaaaaggaccggaggg 46320438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 251 - 424
Target Start/End: Original strand, 23026300 - 23026474
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  23026300 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttcaaacatactt 23026399  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
     ||| || ||| ||  |||||||||| |  |||||||||  | |||||||||||| |||||||| |||| |||||    
T  23026400 gaaattttatcaatatttcttataaaaatgaccaaaaaaattctcacttttgtttctaataaaaaggaccggagg 23026474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 26555782 - 26555669
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaagaaagacgat 103  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||   |||||||||||||||||||||||| |||||||| |||    
T  26555782 actagaattgaagaaggagtgaagagagaaaatgatgatgctgactgatgagagtggaag---gagaggtttgtttgtttgttgtgagaagaaagaagat 26555686  T
Q  104 tgtgaattgtgatttgt 120  Q
    |||||||||||||||||    
T  26555685 tgtgaattgtgatttgt 26555669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 251 - 375
Target Start/End: Original strand, 9663920 - 9664041
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||||||||||| |||||||||| |||    
T  9663920 ccctaaattaattactctttattccaccaacttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttaccttcaaacat-ctt 9664016  T
Q  351 aaaacttaatcgatcttcttataaa 375  Q
     ||||||  || |||||||||||||    
T  9664017 gaaacttggtcaatcttcttataaa 9664041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 251 - 425
Target Start/End: Original strand, 49794971 - 49795147
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||| |||||||||    
T  49794971 cccttaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagagtacaaatgaaatttagcttc-aacatactt 49795069  T
Q  351 aaaacttaatcgat-cttcttataaagag-aaccaaaaaatatt-tcacttttgtttttaataaaagggacaggaggg 425  Q
     |||||| ||| ||  |||||||||| || ||  |||||| ||| |||||||||||| |||||||| |||| ||||||    
T  49795070 gaaacttgatcaatatttcttataaaaagaaaaaaaaaaagattctcacttttgtttctaataaaaaggaccggaggg 49795147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 52118601 - 52118488
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaagaaagacgat 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||| || ||| |||   |||||||| ||||||||||||||||||| | |||||  |||    
T  52118601 actagaattgaagaaggagtgaagagagaaaatgatgctgctgaccgacgagagtg---gaaggagatgtttgtttgtttgttgtgagaggaaaggagat 52118505  T
Q  104 tgtgaattgtgatttgt 120  Q
    |||||||||||||||||    
T  52118504 tgtgaattgtgatttgt 52118488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 26905744 - 26905809
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| |||||||||||||| |||   ||||||||||||||||||||||||||    
T  26905744 gagtgaagagagaaaattatgttgctgactgatgagagtg---gaaggagaggtttgtttgtttgttgt 26905809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 36615296 - 36615231
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| |||||||||||||| |||   ||||||||||||||||||||||||||    
T  36615296 gagtgaagagagaaaattatgttgctgactgatgagagtg---gaaggagaggtttgtttgtttgttgt 36615231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 33280335 - 33280416
Alignment:
Q  252 cctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatt 333  Q
    |||| ||||| ||||||| ||||||  |||  ||||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  33280335 cctatattaactactcttaattccaataaccaacttacttttaatattctctctcgtaataaataagaacacaaatgaaatt 33280416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 25069591 - 25069526
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| || ||||||||||| |||   ||||||||||||||||||||||||||    
T  25069591 gagtgaagagagaaaattatgttgttgactgatgagagtg---gaaggagaggtttgtttgtttgttgt 25069526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 32619396 - 32619323
Alignment:
Q  256 aattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatga 329  Q
    |||||||||||||| | ||||  |||| |||||||||| ||||| |||||| |||||||||||||||| |||||    
T  32619396 aattaattactcttaactccaataactaacttacttttgatattgtctctcgtaataaataaagacacgaatga 32619323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 28211463 - 28211528
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| |||||||| ||||| |||   |||||||| |||||||||||||||||    
T  28211463 gagtgaagagagaaaattatgttgctgacttatgagagtg---gaaggagatgtttgtttgtttgttgt 28211528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 31612861 - 31612906
Alignment:
Q  286 ttacttttaatattctctctcataataaataaagacacaaatgaaa 331  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||    
T  31612861 ttacttttaatattctctctcataatgaataaggacacagatgaaa 31612906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 7e-55; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 252 - 425
Target Start/End: Complemental strand, 33314506 - 33314333
Alignment:
Q  252 cctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactta 351  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| ||     
T  33314506 cctaaattaattactctttattccaccaacttgcttacttttaatattctctctcataataaatgagggcacaaatgaaatttagcttcaaacatatttg 33314407  T
Q  352 aaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||||| ||| ||||||||||||| || ||||||||  || |||||||||||| |||||||| |||| ||||||    
T  33314406 aaacttgatcaatcttcttataaaaaggaccaaaaataatctcacttttgtttataataaaaaggactggaggg 33314333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 254 - 425
Target Start/End: Original strand, 21262915 - 21263086
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  | | |||||||||||||||||||||||||||| ||    
T  21262915 taaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaatatgggcgcaaatgaaatttagcttcaaacatacttgaa 21263014  T
Q  354 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||| ||| ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  21263015 acttgatcaatcttcttataaaaaggaccaaaaaaattatcacttttgtttctaataaaaaggaccggaggg 21263086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 251 - 424
Target Start/End: Original strand, 40385249 - 40385425
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  40385249 ccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 40385348  T
Q  351 aaaacttaatcga---tcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
     ||||||  || |   |||||||||||| || |||||||||  | |||||||||||| |||||||| |||| |||||    
T  40385349 gaaacttggtcaatcttcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagg 40385425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 251 - 425
Target Start/End: Original strand, 3097565 - 3097740
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||| | ||||||||||||| |||||| ||||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  3097565 ccctaaattaaatcctctttattccactaacttatttacttttaattttcactctcataataaataagggcacaaatgaaatttagcttcaaacatactt 3097664  T
Q  351 aaaacttaatcgatcttcttataaagagaac-caaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
     ||||||  || ||||||||||||| || ||  |||||| || |||||||||||| |||||||| |||| ||||||    
T  3097665 gaaacttggtcaatcttcttataaaaaggacaaaaaaaaaatctcacttttgtttctaataaaaaggaccggaggg 3097740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 251 - 413
Target Start/End: Complemental strand, 24868646 - 24868483
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||| ||||||||||||||    
T  24868646 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatactt 24868547  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
     ||||||  || ||  |||||||||| |  || ||||||  | |||||||||||| ||||||||    
T  24868546 gaaacttggtcaatatttcttataaaaaagacaaaaaaaattctcacttttgtttctaataaaa 24868483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 251 - 425
Target Start/End: Original strand, 41174675 - 41174849
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||| |||||||| ||||||||| ||| |||||| ||||||||||  |||||||||||||||||||| | ||||||||||||||||||| ||| ||||||    
T  41174675 ccctcaattaattcctctttatttcactaacttatttacttttaactttctctctcataataaataagggcacaaatgaaatttagcttaaaatatactt 41174774  T
Q  351 aaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
     ||||||  || ||||||||||||| || |||||||||  | |||||||||||| || ||||| |||| ||||||    
T  41174775 gaaacttggtcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctattaaaaaggaccggaggg 41174849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 424572 - 424647
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgttt 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  424572 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgctgagagtggaagaaggagaggtttgttt 424647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 251 - 346
Target Start/End: Complemental strand, 4238031 - 4237936
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacat 346  Q
    ||||||||||||||||||| |||||||||| ||||||  ||||| |||||| ||||||||||||||| | ||||||||||||||| ||||||||||    
T  4238031 ccctaaattaattactcttgattccaccaatttacttcattttattattctatctcataataaataacggcacaaatgaaatttaacttcaaacat 4237936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 18113567 - 18113642
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgttt 79  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||||||||    
T  18113567 actagatttgaagaaggagtgaagagagaaaatgatgttgctgactgctgagaggggaagaaggagaggtttgttt 18113642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 25634224 - 25634289
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| |||||||||||||| |||   ||| ||||||||||||||||||||||    
T  25634224 gagtgaagagagaaaattatgttgctgactgatgagagtg---gaaagagaggtttgtttgtttgttgt 25634289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 17074885 - 17074816
Alignment:
Q  26 agagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaaga 95  Q
    ||||||||||||||| || |||||| || | ||||||||||||||||| |||||| ||||||||| ||||    
T  17074885 agagagaaaatgatgttgttgactgctgggagtggaagaaggagaggtatgtttggttgttgtgagaaga 17074816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 2934903 - 2935006
Alignment:
Q  252 cctaaattaattactctttattccaccaacttacttactttt-aatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||| || |||||  ||| ||| |||||||| ||||  |||||||||||||||||| |  | |||||||||||| ||||||| | ||||    
T  2934903 cctaaattaattacttttgattccggcaatttatttactttttaataacctctctcataataaataagggtataaatgaaatttaacttcaaatacactt 2935002  T
Q  351 aaaa 354  Q
    ||||    
T  2935003 aaaa 2935006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 2355977 - 2356023
Alignment:
Q  289 cttttaatattctctctcataataaataaagacacaaatgaaattta 335  Q
    |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  2355977 cttttagtattctctctcatactaaataattacacaaatgaaattta 2356023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 2356062 - 2356108
Alignment:
Q  289 cttttaatattctctctcataataaataaagacacaaatgaaattta 335  Q
    |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  2356062 cttttagtattctctctcatactaaataattacacaaatgaaattta 2356108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 1e-53; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 243 - 425
Target Start/End: Complemental strand, 10448906 - 10448723
Alignment:
Q  243 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 341  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||   ||||||||||||||| |||||    
T  10448906 tatgaatacccttaaattaattactatttattccatcaacttacttacttttaatattctctctcataatcaataagagcacaaatgaaatttaacttca 10448807  T
Q  342 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    ||||||||| |||||| ||| |||||||||||||||| |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  10448806 aacatacttgaaacttgatcaatcttcttataaagaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 10448723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 243 - 425
Target Start/End: Complemental strand, 11964338 - 11964155
Alignment:
Q  243 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 341  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  11964338 tatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 11964239  T
Q  342 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||||| || |||||| ||| ||||||||||||| || |||||||||  | |||||||||||| ||||| || |||| ||||||    
T  11964238 aacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaatagaaaggaccggaggg 11964155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 244 - 413
Target Start/End: Original strand, 39778658 - 39778829
Alignment:
Q  244 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 342  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  39778658 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 39778757  T
Q  343 acatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
    |||||||| ||||||  || ||  |||||||||| || |||||||||  |||||||||||||| ||||||||    
T  39778758 acatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaa 39778829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 251 - 424
Target Start/End: Original strand, 36191590 - 36191763
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  36191590 ccctaaattaattactctttattccac-aacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 36191688  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
     ||||||| || ||  |||||||||| || ||||||||| || |||||||||||| |||||||| |||| |||||    
T  36191689 gaaacttagtcaatatttcttataaaaaggaccaaaaaaaatctcacttttgtttctaataaaaaggaccggagg 36191763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 251 - 425
Target Start/End: Original strand, 19926801 - 19926974
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  19926801 ccctaaattaattactctttattccaccaacttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttagtttcaaacatactt 19926898  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||||||  || ||  |||||||||| || ||||||||| ||||||||||||||| |||||||| |||| ||||||    
T  19926899 aaaacttggtcaatatttcttataaaaaggaccaaaaaaaatttcacttttgtttctaataaaaaggaccggaggg 19926974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 251 - 425
Target Start/End: Original strand, 10728307 - 10728482
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||    
T  10728307 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcataaatgaaatttagcttcaaacatactt 10728406  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
     ||||||  || ||  |||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  10728407 gaaactttgtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 10728482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 254 - 424
Target Start/End: Original strand, 21345098 - 21345265
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    ||||||||||||||||||||||| |||||||||||||||||||  ||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||    
T  21345098 taaattaattactctttattccatcaacttacttacttttaat--tctctctcacaatcaataaggacacaaatgaaatttagcttcaaacatacttgaa 21345195  T
Q  354 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
    |||| ||| ||||||||||||| || |||||||||| | |||||||||||| |||||||| |||| |||||    
T  21345196 acttgatcaatcttcttataaaaaggaccaaaaaat-tctcacttttgtttctaataaaaaggaccggagg 21345265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 246 - 413
Target Start/End: Original strand, 22066384 - 22066552
Alignment:
Q  246 gaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaac 344  Q
    ||||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||    
T  22066384 gaatacccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagctttaaac 22066483  T
Q  345 atacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
    |||||| |||||| ||| ||||||||||||| || |||||||||  | |||||||||||| ||||||||    
T  22066484 atacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaa 22066552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 244 - 423
Target Start/End: Original strand, 41435615 - 41435795
Alignment:
Q  244 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 342  Q
    ||||||||||| ||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||    
T  41435615 atgaatacccttaaattaattactctttatttcatcaacttatttacttttaatattctatctcataatcaataagggcacaaatgaaatttagcttcaa 41435714  T
Q  343 acatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggag 423  Q
    |||||||| |||||| ||| ||||| ||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||    
T  41435715 acatacttgaaacttgatcaatcttattataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggag 41435795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 238 - 423
Target Start/End: Original strand, 13693530 - 13693716
Alignment:
Q  238 atatttatgaataccc-taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttag 336  Q
    ||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||||     
T  13693530 atattcatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataataaataaggacagaaatgaaatttat 13693629  T
Q  337 cttcaaacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggag 423  Q
    ||| |||||||||| ||||||  || ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||    
T  13693630 ctttaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggag 13693716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 254 - 418
Target Start/End: Complemental strand, 25187114 - 25186950
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||    
T  25187114 taaattaattactcttaattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaa 25187015  T
Q  354 acttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 418  Q
    ||||  || ||  |||||||||| |  ||||||||| ||||||||||||||| |||||||| ||||    
T  25187014 acttggtcaatatttcttataaaaatgaccaaaaaa-atttcacttttgtttctaataaaaaggac 25186950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 251 - 424
Target Start/End: Original strand, 42993820 - 42993994
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| |||||| | ||||||||||||||| ||||||||||||||    
T  42993820 ccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataacaaataagggcacaaatgaaatttatcttcaaacatactt 42993919  T
Q  351 aaaacttaatcgatcttcttataaagagaaccaaaaaatatt-tcacttttgtttttaataaaagggacaggagg 424  Q
     ||| ||  || ||||||||||||| || ||||||||| ||| |||||||||||| |||||||| |||| |||||    
T  42993920 gaaatttggtcaatcttcttataaaaaggaccaaaaaaaattctcacttttgtttctaataaaaaggaccggagg 42993994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 251 - 375
Target Start/End: Complemental strand, 7105732 - 7105608
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||| |||||||    
T  7105732 ccctaaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagggcacaaatgaaatttaccttcaagcatactt 7105633  T
Q  351 aaaacttaatcgatcttcttataaa 375  Q
     ||||||  || |||||||||||||    
T  7105632 gaaacttggtcaatcttcttataaa 7105608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 16916187 - 16916291
Alignment:
Q  16 gaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaagaaagacgattgtgaattgtga 115  Q
    |||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16916187 gaaggagtgaagagagaaaatgttgttgctgactgatgagagtggaagaaggagaggtttgtttgtttgttgtgagaagaaagacgattgtgaattgtga 16916286  T
Q  116 tttgt 120  Q
    |||||    
T  16916287 tttgt 16916291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 251 - 418
Target Start/End: Complemental strand, 28831137 - 28830969
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  28831137 ccctaaattaattactctttattgcaccaatttacttacttttaatattttctctcataataaataaggacacaaatgaaatttaacttcaaacatactt 28831038  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 418  Q
    |||| ||  || ||  |||||||||| || |||||||||  | | |||||| ||| |||||||| ||||    
T  28831037 aaaatttggtcaatatttcttataaaaaggaccaaaaaaattcttacttttatttctaataaaatggac 28830969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 251 - 413
Target Start/End: Original strand, 10700238 - 10700401
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||    
T  10700238 ccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcagacatactt 10700337  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
     ||||||  || ||  |||||||||| |  || ||||||  | |||||||||||| ||||||||    
T  10700338 gaaacttggtcaatatttcttataaaaaagactaaaaaaattctcacttttgtttctaataaaa 10700401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 291 - 425
Target Start/End: Complemental strand, 41462805 - 41462670
Alignment:
Q  291 tttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaat 389  Q
    |||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||  || ||  |||||||||| || ||| |||||     
T  41462805 tttattattctctctcataataaataagggcacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaaggacctaaaaaa 41462706  T
Q  390 atttcacttttgtttttaataaaagggacaggaggg 425  Q
     | |||||||||||| |||||||| |||| ||||||    
T  41462705 ttctcacttttgtttctaataaaaaggactggaggg 41462670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 16621989 - 16622053
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataa 317  Q
    ||||| |||||||||||||  ||| ||||||||||||| |||||||||  |||||||||||||||||    
T  16621989 ccctatattaattactcttatttctaccaacttacttatttttaatat--tctctcataataaataa 16622053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 45695655 - 45695721
Alignment:
Q  257 attaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacaca 324  Q
    |||||||||| || || ||||||| ||||||||| |||| |||||||| |||||||||||||||||||    
T  45695655 attaattacttttcatcccaccaatttacttactcttaa-attctctcccataataaataaagacaca 45695721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 4076365 - 4076430
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| || ||||||||||| |||   ||| ||||||||||||||||||||||    
T  4076365 gagtgaagagagaaaattatgttgttgactgatgagagtg---gaaagagaggtttgtttgtttgttgt 4076430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 246
Target Start/End: Original strand, 16916383 - 16916417
Alignment:
Q  212 aatttccactttccttcccgtgccttatatttatg 246  Q
    |||||||||||||||||||||||||||| ||||||    
T  16916383 aatttccactttccttcccgtgccttatgtttatg 16916417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 4e-53; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 251 - 424
Target Start/End: Complemental strand, 32305887 - 32305713
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  32305887 ccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 32305788  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
     ||||||  || ||  |||||||||| || |||||||||  |||||||||||||| |||||||| |||| |||||    
T  32305787 gaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaaaggaccggagg 32305713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 240 - 418
Target Start/End: Complemental strand, 8669924 - 8669746
Alignment:
Q  240 atttatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagct 338  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||    
T  8669924 atttatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaact 8669825  T
Q  339 tcaaacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 418  Q
    |||||||||||| |||||| ||| ||||||||||||| || | ||||||| || |||||||| ||| |||||||| ||||    
T  8669824 tcaaacatacttgaaacttgatcaatcttcttataaaaagga-caaaaaaaatctcacttttatttctaataaaaaggac 8669746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 243 - 424
Target Start/End: Complemental strand, 13882272 - 13882091
Alignment:
Q  243 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 341  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||||||    
T  13882272 tatgaatacccttaaattaattactctttattccatcaacttacttacttt-aatattctctctcataatcaataagggcacaaatgaaatttagcttca 13882174  T
Q  342 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
    |||||| || |||||| ||| ||||||||||||| || |||||||||  | |||||||| ||| |||||||| |||| |||||    
T  13882173 aacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttatttctaataaaaaggaccggagg 13882091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 251 - 424
Target Start/End: Complemental strand, 8107072 - 8106899
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||    
T  8107072 ccctaaattaattcctctttattccactaacttatttacttttaattttctatctcataataaataaggacacaaatgaaatttagtttcaaacatactt 8106973  T
Q  351 aaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 424  Q
     ||||||  || ||||||||||||| || | |||||||  | ||| |||||||| |||||||| |||| |||||    
T  8106972 gaaacttggtcaatcttcttataaaaaggatcaaaaaaattctcatttttgtttctaataaaaaggaccggagg 8106899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 254 - 418
Target Start/End: Complemental strand, 29226451 - 29226288
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||  ||||||| ||||| | |||||||||||||||||||||||||||||| ||    
T  29226451 taaattaattactctttattccatcaacttacttacttttaatattttcattcataatcaataagg-cacaaatgaaatttagcttcaaacatacttgaa 29226353  T
Q  354 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 418  Q
    |||| ||| ||||||||||||| || | |||||||  | |||||||||||| |||||||| ||||    
T  29226352 acttgatcaatcttcttataaaaaggaacaaaaaaattctcacttttgtttctaataaaaaggac 29226288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 250 - 413
Target Start/End: Original strand, 35634804 - 35634968
Alignment:
Q  250 accctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatact 349  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  35634804 accctaaattaattactctttatcgcaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatact 35634903  T
Q  350 taaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
    | ||||||  || ||  |||||||||| |  || ||||||  | |||||||||||| ||||||||    
T  35634904 tgaaacttggtcaatatttcttataaaaatgacaaaaaaaattctcacttttgtttataataaaa 35634968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 28535469 - 28535356
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaagaaagacgat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||| |||||||||||||||| |||||||  |||    
T  28535469 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagagtg---gaaggagaggtctgtttgtttgttgtgagaagaaaggagat 28535373  T
Q  104 tgtgaattgtgatttgt 120  Q
    |||||||||||||||||    
T  28535372 tgtgaattgtgatttgt 28535356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 11463698 - 11463789
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaaga 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||    
T  11463698 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgctgagagtggaagaaggagaggtttgtttgtttgttgtgagaaga 11463789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 254 - 413
Target Start/End: Complemental strand, 37533942 - 37533783
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| | |||||| |||||||| ||||||| ||| || ||    
T  37533942 taaattaattactctttattccatcaacttacttatttttaatattctctctcataatcaataagggcacaaacgaaatttaacttcaaatatatttgaa 37533843  T
Q  354 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 413  Q
    |||| ||| ||||||| ||||| || | |||||||  | |||||||||||| ||||||||    
T  37533842 acttgatcaatcttctaataaaaaggatcaaaaaaattctcacttttgtttataataaaa 37533783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 243 - 357
Target Start/End: Complemental strand, 42570090 - 42569975
Alignment:
Q  243 tatgaata-ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 341  Q
    |||||||| |||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  42570090 tatgaatatccctaaattaattactatttatttcatcaacttacttatttttaatattctctctcataataaataaatgcacaaataaaatttagcttca 42569991  T
Q  342 aacatacttaaaactt 357  Q
    |  |||||||||||||    
T  42569990 atgatacttaaaactt 42569975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 36741715 - 36741806
Alignment:
Q  257 attaattactctttattccaccaacttacttacttttaatattctctc---tcataataaataaagacacaaatgaaatttagcttcaaaca 345  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||   | ||||||||||| |||||||||||||||||||||| ||||    
T  36741715 attaattactcttaattccactaacttacttacttttaatattctctctaataataataaataaggacacaaatgaaatttagcttctaaca 36741806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 45483714 - 45483649
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| |||||||||||||| |||   ||||||||||||||||||||||||||    
T  45483714 gagtgaagagagaaaattatgttgctgactgatgagagtg---gaaggagaggtttgtttgtttgttgt 45483649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 17855527 - 17855424
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||||| ||   ||||  |||||| |||||||||||| | | |||||| |||||||| || ||||||||||||||| ||| |||| ||||    
T  17855527 ccctaaattaattactattgcctccattaacttaattacttttaatactatttctcatcataaataaggatacaaatgaaatttagtttccaacacactt 17855428  T
Q  351 aaaa 354  Q
    ||||    
T  17855427 aaaa 17855424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 31598740 - 31598688
Alignment:
Q  261 attactctttattccaccaacttacttacttttaatattctctctcataataa 313  Q
    |||||| || |||| || |||||| ||||||||||||||||||||||||||||    
T  31598740 attactattaattctactaacttaattacttttaatattctctctcataataa 31598688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 32026810 - 32026755
Alignment:
Q  260 aattactctttattccaccaacttacttacttttaatattctctctcataataaat 315  Q
    |||||||||  ||| |||||| |||| ||||||||||||||||||||| |||||||    
T  32026810 aattactctggattacaccaatttacatacttttaatattctctctcacaataaat 32026755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 6e-52; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 250 - 425
Target Start/End: Original strand, 24338025 - 24338201
Alignment:
Q  250 accctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatact 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  24338025 accctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatact 24338124  T
Q  350 taaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    | ||||||  || ||  |||||||||| |  |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  24338125 tgaaacttggtcaatatttcttataaaaaagaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 24338201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 244 - 425
Target Start/End: Complemental strand, 1365832 - 1365649
Alignment:
Q  244 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 342  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  1365832 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 1365733  T
Q  343 acatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 425  Q
    |||||||| ||||||  || ||  |||||||||| || ||||| |||  | |||||||||||| |||||||| |||| ||||||    
T  1365732 acatacttgaaacttggtcaatatttcttataaaaaggaccaacaaaattctcacttttgtttctaataaaaaggaccggaggg 1365649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 5013889 - 5014005
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaagaaagacgat 103  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  5013889 actagatttgaagaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaagaagaagaggtttgtttgtttgttgtgagaagaaagacgat 5013988  T
Q  104 tgtgaattgtgatttgt 120  Q
    |||||||||||||||||    
T  5013989 tgtgaattgtgatttgt 5014005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 251 - 418
Target Start/End: Original strand, 7243430 - 7243598
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  7243430 ccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttaacttcaaacatactt 7243529  T
Q  351 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 418  Q
     ||||||  || ||  |||||||||| |  |||||||||  | |||||||||||| |||||||| ||||    
T  7243530 gaaacttggtcaatatttcttataaaaaagaccaaaaaagttctcacttttgtttataataaaaaggac 7243598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 16693275 - 16693162
Alignment:
Q  4 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgtgacaagaaagacgat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||||||||| |||||||  |||    
T  16693275 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagagtg---gaaggagaggtttgtttgtttgttgtgagaagaaaggagat 16693179  T
Q  104 tgtgaattgtgatttgt 120  Q
    |||||||||||||||||    
T  16693178 tgtgaattgtgatttgt 16693162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 18819506 - 18819571
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| |||||||||||||| |||   ||||||||||||||||||||||||||    
T  18819506 gagtgaagagagaaaattatgttgctgactgatgagagtg---gaaggagaggtttgtttgtttgttgt 18819571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 24904412 - 24904477
Alignment:
Q  20 gagtgaagagagaaaatgatgctgctgactgatgagggtggaagaaggagaggtttgtttgtttgttgt 88  Q
    ||||||||||||||||| ||| |||||| ||||||| |||   ||||||||||||||||||||||||||    
T  24904412 gagtgaagagagaaaattatgttgctgattgatgagagtg---gaaggagaggtttgtttgtttgttgt 24904477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 80; Significance: 5e-37; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 6879 - 6776
Alignment:
Q  254 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 353  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||| ||    
T  6879 taaattaattactctttattctaccaacttacttacttttaatattctttctcataataaataagcgcacaaatgaaatttagcttcaaacatacttgaa 6780  T
Q  354 actt 357  Q
    ||||    
T  6779 actt 6776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 73; Significance: 8e-33; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 279 - 418
Target Start/End: Original strand, 258358 - 258498
Alignment:
Q  279 aacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaaacttaatcgat-cttcttataaaga 377  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||  || ||  |||||||||| |    
T  258358 aacttacttaattttaatattctctctcataataaataaaggcacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaa 258457  T
Q  378 gaaccaaaaaatatttcacttttgtttttaataaaagggac 418  Q
    | ||| |||||  | |||||||||||| |||||||| ||||    
T  258458 ggacctaaaaaattctcacttttgtttctaataaaaaggac 258498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 68; Significance: 8e-30; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 30589 - 30490
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 350  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||  |||||||| ||||    
T  30589 ccctaaattaattactcttgattccgccaacttacttacttttaatattgtctctcataataaataagggcacaaatgaaatttaatttcaaacaaactt 30490  T

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Target: scaffold0057; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 30844 - 30906
Alignment:
Q  251 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataa 317  Q
    ||||||||||||||||||| ||||||||||| ||||    |||||||||||||||||||||||||||    
T  30844 ccctaaattaattactcttgattccaccaacatact----tttaatattctctctcataataaataa 30906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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