View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_20 (Length: 436)
Name: NF11581_low_20
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 37183359 - 37182943
Alignment:
| Q |
1 |
agaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183359 |
agaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaa |
37183260 |
T |
|
| Q |
101 |
gtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgctgcatttataacttttttcatttaagactatgttgtctcccaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183259 |
gtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgttgcatttataacttttttcatttaagactatgttgtctcccaagt |
37183160 |
T |
|
| Q |
201 |
catgcatgacttaaccaatcactcattgaatttggttacacatattatgcacggtgatttgaatttccatatgaatgtggctgagtgatgtttaaaaatg |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183159 |
catgcatgacttaaccaattactcattgaatttggttacacgtattatgcacggtgatttgaatttccatatgaatgtggctgagtgatgtttaaaaatg |
37183060 |
T |
|
| Q |
301 |
cttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagggaagattgaattt |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183059 |
cttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttggagtcccacgcttcctcttataaggtataagggaagattgaattt |
37182960 |
T |
|
| Q |
401 |
ctgctgaacatagtaaa |
417 |
Q |
| |
|
||||||||||||||||| |
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| T |
37182959 |
ctgctgaacatagtaaa |
37182943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 37194491 - 37194075
Alignment:
| Q |
1 |
agaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194491 |
agaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaa |
37194392 |
T |
|
| Q |
101 |
gtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgctgcatttataacttttttcatttaagactatgttgtctcccaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194391 |
gtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgttgcatttataacttttttcatttaagactatgttgtctcccaagt |
37194292 |
T |
|
| Q |
201 |
catgcatgacttaaccaatcactcattgaatttggttacacatattatgcacggtgatttgaatttccatatgaatgtggctgagtgatgtttaaaaatg |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194291 |
catgcatgacttaaccaattactcattgaatttggttacacgtattatgcacggtgatttgaatttccatatgaatgtggctgagtgatgtttaaaaatg |
37194192 |
T |
|
| Q |
301 |
cttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagggaagattgaattt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194191 |
cttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttggagtcccacgcttcctcttataaggtataagggaagattgaattt |
37194092 |
T |
|
| Q |
401 |
ctgctgaacatagtaaa |
417 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
37194091 |
ctgctgaacatagtaaa |
37194075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 37202427 - 37202286
Alignment:
| Q |
4 |
aatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtc |
103 |
Q |
| |
|
|||||||| | |||| |||||||||||| |||||||||| | ||||||||| |||||| || | ||||||| ||||||||||||||| ||||||||||| |
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|
| T |
37202427 |
aatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgccaaatctaaagtt |
37202328 |
T |
|
| Q |
104 |
aaacgctttctgaaatgctcagtggtagatggtttgttttag |
145 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
37202327 |
aagtgctttctgaaatgctcagtggttgatggtttgatttag |
37202286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 37180293 - 37180156
Alignment:
| Q |
1 |
agaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||| || ||| ||| | |||||| || |||||||| ||||||| ||||| | ||||||| |
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| T |
37180293 |
agaaatatgtgttaaagagactgcttgcaaagaaagattgaccgcagcaaagaatgagtctacctcaatatctcaaacagttcggtattgcacatctaaa |
37180194 |
T |
|
| Q |
101 |
gtcaaacgctttctgaaatgctcagtggtagatggttt |
138 |
Q |
| |
|
|||| |||||||||||| |||||||| | |||||||| |
|
|
| T |
37180193 |
gtcagtcgctttctgaaacgctcagtgatggatggttt |
37180156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 37202053 - 37201993
Alignment:
| Q |
292 |
ttaaaaatgcttgcatgagataagtggtatattta-tttaaaacaaattaacaatcatgtt |
351 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||| ||||||| |||||||| |||||||| |
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|
| T |
37202053 |
ttaaaaatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgtt |
37201993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 37211495 - 37211461
Alignment:
| Q |
245 |
ttatgcacggtgatttgaatttccatatgaatgtg |
279 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
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|
| T |
37211495 |
ttatgcatggtgatttgaatttccatatgaatgtg |
37211461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 37217086 - 37217028
Alignment:
| Q |
293 |
taaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtt |
351 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || |||||||||| || |||||||| |
|
|
| T |
37217086 |
taaaaatgtctgcatgagatgagtggtatattttttaaaaacaaatttaccatcatgtt |
37217028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 7527198 - 7527073
Alignment:
| Q |
292 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagggaag |
391 |
Q |
| |
|
|||| |||| ||||||||| | |||||||||||||||||||||||||||| || ||||| || |||| ||| ||||||| | |||||| | ||||| |
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|
| T |
7527198 |
ttaataatgtttgcatgaggtgtgtggtatatttatttaaaacaaattaaccatgatgttataggagtatcactcttcctcctctaaggtgtgtgggaaa |
7527099 |
T |
|
| Q |
392 |
attgaatttctgctgaacatagtaaa |
417 |
Q |
| |
|
||| ||||||||| ||||| |||||| |
|
|
| T |
7527098 |
attaaatttctgcagaacaaagtaaa |
7527073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 414835 - 414914
Alignment:
| Q |
292 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctc |
372 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| |||||||||||| || |||| || ||||||||| ||||||| |
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|
| T |
414835 |
ttaaaaatgtttgcatgagatgattggtatatttattt-aaacaaattaaccattgtgttataggagtcccactcttcctc |
414914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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