View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11581_low_22 (Length: 411)
Name: NF11581_low_22
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 37837197 - 37837577
Alignment:
| Q |
18 |
catcaagcgaatagttaattccgaaattgtccagaaatcatttctattggtcaagcaccaatgttttccgccca-tttcctattgtaagctgcctcatgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37837197 |
catcaagcgaatagttaattccgaaattgtcccgaaatcatttctattggtcaagcaccaatgttttccgcccaatttcctattgtaagctgcctcatgc |
37837296 |
T |
|
| Q |
117 |
attttccccacaactttgaatattgacacgtagccttcgtgaatttcgggatgatttttctagctatgtatagcagcgccgttgatcaacatataaatcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
37837297 |
attttccccacaactttgaatattgacacgtagccttcgtgaatttcgggatgatttttctcgctatgtatagcagcaccgttcatcaacatataaatcc |
37837396 |
T |
|
| Q |
217 |
tctttgacaccttcattgaagatagatgctcttaacagaagaaatgtaaactttcaacagaataatcaagctcaaaaatcggaatttagcagtagcattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37837397 |
tctttgacaccttcattgaagatagatgctcttaacagaagaaatgtaaactttcaacagaaaaatcaagctcaaaaatcggaatttagcagtagcattt |
37837496 |
T |
|
| Q |
317 |
catatccaccttctccaaactgcactaaccaatatgtacatgtacatataatagaatttgcaatttcgattatgtcatttc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37837497 |
catatccaccttctccaaactgcactaaccaatatgtacatgtacatataatagaatttgcaatttcgattatgtcatttc |
37837577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University