View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11581_low_24 (Length: 404)

Name: NF11581_low_24
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11581_low_24
NF11581_low_24
[»] chr4 (25 HSPs)
chr4 (72-394)||(10271268-10271590)
chr4 (72-392)||(10281992-10282312)
chr4 (144-321)||(18277382-18277560)
chr4 (104-253)||(15455208-15455357)
chr4 (3-163)||(10985897-10986049)
chr4 (4-182)||(3270386-3270560)
chr4 (4-125)||(12885177-12885294)
chr4 (4-162)||(3268194-3268348)
chr4 (1-40)||(21332726-21332765)
chr4 (195-253)||(15427684-15427742)
chr4 (195-253)||(15434302-15434360)
chr4 (103-163)||(26781075-26781135)
chr4 (103-163)||(45313007-45313067)
chr4 (15-58)||(10422009-10422052)
chr4 (1-58)||(13861276-13861331)
chr4 (127-203)||(13033887-13033964)
chr4 (337-394)||(15427543-15427600)
chr4 (337-394)||(15434161-15434218)
chr4 (78-165)||(8081903-8081991)
chr4 (1-48)||(17282672-17282717)
chr4 (1-48)||(25239667-25239712)
chr4 (15-58)||(9901896-9901939)
chr4 (15-58)||(45313109-45313152)
chr4 (16-58)||(26780996-26781038)
chr4 (115-163)||(9901994-9902042)
[»] chr7 (17 HSPs)
chr7 (4-392)||(21802080-21802464)
chr7 (4-165)||(22703752-22703910)
chr7 (4-163)||(9549154-9549310)
chr7 (15-164)||(29164708-29164854)
chr7 (132-234)||(18185413-18185516)
chr7 (4-153)||(22705473-22705619)
chr7 (72-163)||(30770434-30770525)
chr7 (145-203)||(1855493-1855552)
chr7 (103-164)||(2250272-2250333)
chr7 (1-58)||(18185587-18185642)
chr7 (16-58)||(28794222-28794264)
chr7 (103-164)||(15634724-15634785)
chr7 (3-48)||(20093506-20093551)
chr7 (115-163)||(30765222-30765270)
chr7 (132-165)||(21310842-21310875)
chr7 (1-49)||(47295863-47295909)
chr7 (22-58)||(30770388-30770424)
[»] chr6 (21 HSPs)
chr6 (72-392)||(19860300-19860620)
chr6 (115-388)||(18735635-18735909)
chr6 (4-165)||(8305920-8306078)
chr6 (4-164)||(15119904-15120060)
chr6 (24-163)||(24438779-24438915)
chr6 (4-154)||(4409063-4409210)
chr6 (15-163)||(12738355-12738500)
chr6 (5-157)||(7968681-7968830)
chr6 (4-163)||(18043199-18043354)
chr6 (103-165)||(3876188-3876250)
chr6 (106-164)||(15319261-15319319)
chr6 (15-54)||(14910571-14910610)
chr6 (15-58)||(29482553-29482596)
chr6 (103-165)||(29482449-29482511)
chr6 (134-164)||(372739-372769)
chr6 (16-58)||(14479957-14479999)
chr6 (15-49)||(19860246-19860280)
chr6 (15-49)||(23574365-23574399)
chr6 (138-175)||(19885567-19885604)
chr6 (127-163)||(12936521-12936557)
chr6 (89-165)||(18014733-18014809)
[»] scaffold0002 (2 HSPs)
scaffold0002 (72-392)||(390998-391321)
scaffold0002 (102-163)||(380614-380675)
[»] chr2 (20 HSPs)
chr2 (115-392)||(25134213-25134490)
chr2 (15-379)||(23929443-23929802)
chr2 (4-376)||(25134119-25134474)
chr2 (132-390)||(27346806-27347062)
chr2 (115-392)||(22453106-22453383)
chr2 (4-165)||(3770117-3770274)
chr2 (4-161)||(41266382-41266536)
chr2 (77-197)||(29568141-29568261)
chr2 (4-165)||(23756004-23756163)
chr2 (4-163)||(26159219-26159375)
chr2 (72-165)||(42534370-42534463)
chr2 (304-388)||(29568052-29568136)
chr2 (103-163)||(3105066-3105126)
chr2 (138-184)||(12093997-12094043)
chr2 (15-48)||(42534317-42534350)
chr2 (136-203)||(17745860-17745927)
chr2 (15-49)||(27347142-27347176)
chr2 (13-58)||(19092685-19092730)
chr2 (135-163)||(45279205-45279233)
chr2 (135-163)||(45286604-45286632)
[»] chr8 (23 HSPs)
chr8 (4-257)||(18040666-18040916)
chr8 (108-379)||(22618463-22618735)
chr8 (103-388)||(24060192-24060477)
chr8 (265-392)||(18043448-18043574)
chr8 (4-165)||(2085928-2086086)
chr8 (4-163)||(17775566-17775722)
chr8 (103-388)||(14058390-14058674)
chr8 (4-163)||(32009199-32009353)
chr8 (4-162)||(18574206-18574360)
chr8 (4-163)||(10532975-10533129)
chr8 (141-203)||(15604320-15604382)
chr8 (141-203)||(15612671-15612733)
chr8 (103-163)||(41281089-41281149)
chr8 (76-165)||(24033621-24033710)
chr8 (15-58)||(7454861-7454904)
chr8 (115-163)||(33273797-33273845)
chr8 (15-58)||(7999612-7999655)
chr8 (15-58)||(41281003-41281046)
chr8 (1-49)||(1788622-1788668)
chr8 (135-203)||(13172768-13172837)
chr8 (72-164)||(7454913-7455005)
chr8 (18-58)||(11709330-11709370)
chr8 (132-164)||(25820644-25820676)
[»] scaffold0008 (2 HSPs)
scaffold0008 (15-388)||(252948-253318)
scaffold0008 (105-164)||(242532-242591)
[»] chr5 (22 HSPs)
chr5 (132-390)||(23494982-23495240)
chr5 (121-316)||(42792189-42792386)
chr5 (4-163)||(8244369-8244525)
chr5 (4-163)||(5931046-5931204)
chr5 (15-163)||(22922236-22922380)
chr5 (88-163)||(19330157-19330232)
chr5 (72-163)||(22922932-22923023)
chr5 (78-163)||(24095168-24095254)
chr5 (1-58)||(36712831-36712886)
chr5 (115-163)||(26377337-26377385)
chr5 (15-58)||(41037849-41037892)
chr5 (115-165)||(15620489-15620539)
chr5 (15-54)||(5590891-5590930)
chr5 (15-46)||(19330087-19330118)
chr5 (15-58)||(22922833-22922875)
chr5 (15-58)||(23495311-23495354)
chr5 (138-185)||(28421741-28421788)
chr5 (15-49)||(20899790-20899824)
chr5 (15-48)||(24095303-24095336)
chr5 (132-165)||(36712957-36712990)
chr5 (115-163)||(38608130-38608179)
chr5 (22-54)||(15620400-15620432)
[»] chr3 (13 HSPs)
chr3 (116-392)||(16853301-16853582)
chr3 (103-388)||(22006124-22006410)
chr3 (103-388)||(22013641-22013927)
chr3 (15-163)||(22914912-22915057)
chr3 (4-163)||(1997866-1998020)
chr3 (96-163)||(8733244-8733311)
chr3 (96-163)||(9085485-9085552)
chr3 (141-203)||(10848491-10848553)
chr3 (115-163)||(19773246-19773294)
chr3 (108-165)||(3559402-3559459)
chr3 (103-163)||(16914563-16914623)
chr3 (143-203)||(29954620-29954680)
chr3 (143-203)||(30003774-30003834)
[»] chr1 (16 HSPs)
chr1 (115-388)||(8991051-8991325)
chr1 (140-390)||(24974202-24974455)
chr1 (4-165)||(19967604-19967761)
chr1 (132-225)||(21815831-21815924)
chr1 (72-163)||(38621663-38621754)
chr1 (4-58)||(19442296-19442350)
chr1 (16-56)||(9858931-9858971)
chr1 (104-163)||(30893872-30893931)
chr1 (115-163)||(8996964-8997012)
chr1 (103-163)||(9263382-9263442)
chr1 (138-185)||(23933978-23934025)
chr1 (72-162)||(9858829-9858919)
chr1 (1-58)||(22186168-22186223)
chr1 (15-56)||(24974080-24974121)
chr1 (72-108)||(19442361-19442397)
chr1 (115-163)||(19442392-19442440)
[»] scaffold0192 (1 HSPs)
scaffold0192 (103-377)||(11959-12236)
[»] scaffold0042 (2 HSPs)
scaffold0042 (138-388)||(74492-74744)
scaffold0042 (115-163)||(68533-68581)
[»] scaffold0034 (1 HSPs)
scaffold0034 (4-164)||(47601-47758)
[»] scaffold0063 (2 HSPs)
scaffold0063 (105-254)||(37060-37210)
scaffold0063 (16-58)||(49421-49463)
[»] scaffold0265 (1 HSPs)
scaffold0265 (132-225)||(16885-16978)
[»] scaffold0989 (1 HSPs)
scaffold0989 (4-163)||(1707-1863)
[»] scaffold0150 (1 HSPs)
scaffold0150 (72-165)||(30307-30400)
[»] scaffold0096 (2 HSPs)
scaffold0096 (244-390)||(11235-11381)
scaffold0096 (16-58)||(11067-11109)
[»] scaffold0299 (1 HSPs)
scaffold0299 (8-165)||(19007-19160)
[»] scaffold0043 (1 HSPs)
scaffold0043 (142-202)||(56913-56973)
[»] scaffold0058 (3 HSPs)
scaffold0058 (4-58)||(1569-1622)
scaffold0058 (15-49)||(15336-15370)
scaffold0058 (115-163)||(15237-15285)
[»] scaffold0083 (1 HSPs)
scaffold0083 (72-165)||(4445-4538)
[»] scaffold0025 (1 HSPs)
scaffold0025 (103-163)||(86642-86702)
[»] scaffold0280 (2 HSPs)
scaffold0280 (19-58)||(1239-1278)
scaffold0280 (115-165)||(1332-1382)
[»] scaffold0111 (1 HSPs)
scaffold0111 (15-58)||(3024-3067)
[»] scaffold0362 (2 HSPs)
scaffold0362 (1-58)||(7531-7586)
scaffold0362 (115-163)||(7640-7688)
[»] scaffold0170 (1 HSPs)
scaffold0170 (102-144)||(16595-16637)
[»] scaffold0197 (1 HSPs)
scaffold0197 (132-165)||(24460-24493)
[»] scaffold0101 (1 HSPs)
scaffold0101 (140-184)||(44495-44539)
[»] scaffold0091 (1 HSPs)
scaffold0091 (18-58)||(912-952)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 72 - 394
Target Start/End: Complemental strand, 10271590 - 10271268
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgcc 171  Q
    |||||||||||||||  |||||| |||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||    
T  10271590 atccgctccaagaagcattttggtgcatttcaccaccactaaaaccaccgcattcaaagcaccggcagtcaccttctgatcaggtacgatcagtggcgcc 10271491  T
Q  172 gtctgtgggaaatataagctctccccgtttttatactcctaaaagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacg 271  Q
    |||| | ||||||| ||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||| ||| | | || ||||    
T  10271490 gtctatcggaaatacaagctctcctcgtttttatactcctaaaaaccaaatctttccaaaaaattaccatggctgccaacggtggccactcccagttacg 10271391  T
Q  272 aagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaa 371  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  10271390 aagtgatattcgcattcctcaaagggatgacatgacatcttcaccttcacctggagacacacccagagaggaaccagcacaaataattcctctccaagaa 10271291  T
Q  372 aggcctctacagggtcccctatg 394  Q
    |||||||| ||||||||||||||    
T  10271290 aggcctctgcagggtcccctatg 10271268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 72 - 392
Target Start/End: Complemental strand, 10282312 - 10281992
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgcc 171  Q
    ||||| |||||||||  |||||| |||||||| || |||| | |||||||||||||||| || || |||||||||||||||||||||||||| || | ||    
T  10282312 atccgatccaagaagcattttggtgcatttcatcatcactaaaaccaccgcattcaaagcacaggcagtcaccttctgatcaggtacgatcagtgacacc 10282213  T
Q  172 gtctgtgggaaatataagctctccccgtttttatactcctaaaagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacg 271  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||| | | || ||||    
T  10282212 gtctatgggaaatacaagctctccccgtttttatactcctaaaaaccaaatctttccaaaaaattaccatggctgccaacggtgcccactcccagttacg 10282113  T
Q  272 aagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaa 371  Q
    ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||  | |||| ||||| |||||||||||||||||||||||    
T  10282112 aagtgagattcccattcctcaaagggatgacatgacatattcaccttcacctggagacacacccacagagaaaccatcacaaataattcctctccaagaa 10282013  T
Q  372 aggcctctacagggtccccta 392  Q
    |||||||| ||||||||||||    
T  10282012 aggcctctgcagggtccccta 10281992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 144 - 321
Target Start/End: Original strand, 18277382 - 18277560
Alignment:
Q  144 cttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttttatactcctaaaagctaaagctttccaaa-aaattaccatg 242  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| || |||  |||    
T  18277382 cttctgatcagatacgatcagtggcgccgcctgtgggaaatataagctctccccgcttttatactcctaaaaaccaaagctttccaaagaagttaatatg 18277481  T
Q  243 actgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcac 321  Q
     |||||||||||| | ||| | |||||||||||||| |  |||| ||||||  ||||| |||| |||| ||||||||||    
T  18277482 gctgccaacggtgtcaattcccagatacgaagtgaggtatgcatccctcaacaggatggcatgacatcctcaccttcac 18277560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 15455357 - 15455208
Alignment:
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttt 203  Q
    |||||||||| ||||||||||| |||| | ||  |||||||||| ||||||||||||||| ||||| ||| |||||||||||||| ||||||| ||||||    
T  15455357 ccaccactca-accaccgcatttaaagcaacgaaagtcaccttcagatcaggtacgatcagtggcgtcgtatgtgggaaatataaactctccctgttttt 15455259  T
Q  204 atactcctaaaagctaaagctttccaa-aaaattaccatgactgccaacgg 253  Q
    || || |||||| | |||||||||||| |||| ||||||||||||||||||    
T  15455258 atcctactaaaaaccaaagctttccaaaaaaactaccatgactgccaacgg 15455208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 10985897 - 10986049
Alignment:
Q  3 caaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttc 102  Q
    |||||||||||||||||||||||||||||    ||||||| |||||||||||||||             ||||||||||||||    ||||||| |||||    
T  10985897 caaaccctcactctctctgatctctactt----gagcgtcagagtgcttgcaggtacataccccc----atccgctccaagaaacactttggcgtatttc 10985988  T
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||||| |||||||||||||||| ||||  |||||||||||||||||||| |||||    
T  10985989 accaccactcaaaccaccgcattcaaagcaccgacagtcaccttctgatcaggtatgatca 10986049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 3270560 - 3270386
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||| || |||||||||||||||||| ||||||||             ||||| ||||| ||| | |||||||||||  |    
T  3270560 aaaccctcactctctctgatctctgctgacttgagcgtcggagtgcctgcaggtacacacccccc---atccgttccaacaag-cgtttggcgcattcta 3270465  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaa 182  Q
    |||||||||| |||||||||||||||| ||||| |  |||||||| |||| ||||| ||| | ||||||||||||||||    
T  3270464 ccaccactcaaaccaccgcattcaaagcaccggcaaccaccttcttatcaagtacgctcagtagcgccgtctgtgggaa 3270386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 12885294 - 12885177
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||             |||||||||||||||| |||||||||||||||    
T  12885294 aaaccctcaccctctctgatctctacttacttgagcgtcggagtgcctgcaggta----cacacccccatccgctccaagaagtattttggcgcatttca 12885199  T
Q  104 ccaccactcagaccaccgcatt 125  Q
    |||||||| | ||||| |||||    
T  12885198 ccaccactaaaaccactgcatt 12885177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 3268348 - 3268194
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||||||||||||||||||||||||| |||||||||||||| | | ||||||||             ||||| ||||| |||| ||| | ||||||  |    
T  3268348 aaaccctcactctctctgatctctactgacttgagcgtcggaatacatgcaggtacacactcccc---atccgttccaacaagtgtttag-cgcattcta 3268253  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatc 162  Q
    |||||||||| ||||| |||||||||| ||||| || ||||||||||||||||||||||    
T  3268252 ccaccactcaaaccactgcattcaaagcaccggcagccaccttctgatcaggtacgatc 3268194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21332726 - 21332765
Alignment:
Q  1 ctcaaaccctcactctctctgatctctacttacttgagcg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21332726 ctcaaaccctcactctctctgatctctacttacttgagcg 21332765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 15427742 - 15427684
Alignment:
Q  195 cccgtttttatactcctaaaagctaaagctttccaaaaaattaccatgactgccaacgg 253  Q
    ||||||||||| || |||||| | |||||||||||||||| ||||||||||||||||||    
T  15427742 cccgtttttatcctactaaaaaccaaagctttccaaaaaactaccatgactgccaacgg 15427684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 15434360 - 15434302
Alignment:
Q  195 cccgtttttatactcctaaaagctaaagctttccaaaaaattaccatgactgccaacgg 253  Q
    ||||||||||| || |||||| | |||||||||||||||| ||||||||||||||||||    
T  15434360 cccgtttttatcctactaaaaaccaaagctttccaaaaaactaccatgactgccaacgg 15434302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 26781075 - 26781135
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||| | ||||||||||| |||| ||||  ||||||||||||||||||||||||||    
T  26781075 accaccacttaaaccaccgcatttaaagcaccgacagtcaccttctgatcaggtacgatca 26781135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 45313067 - 45313007
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||||| ||||||||||| |||||||||| ||||| ||||| ||||| ||||||||    
T  45313067 accaccactcaaaccaccgcatttaaagtaccggcagtcatcttctaatcagatacgatca 45313007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 10422052 - 10422009
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  10422052 ctctctgatctctactaacttgagcgtcggagtgcctgcaggta 10422009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13861331 - 13861276
Alignment:
Q  1 ctcaaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||||||||  | |||||||| |||||||||||||||||| ||||||||    
T  13861331 ctcaaaccctcactctct--ggtctctactgacttgagcgtcggagtgcctgcaggta 13861276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 13033887 - 13033964
Alignment:
Q  127 aaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaat-ataagctctccccgttttt 203  Q
    |||| ||||| || |||||| |||||||||||||||| ||||| | |||||||||||| | ||||| |||||||||||    
T  13033887 aaagcaccggcagccaccttttgatcaggtacgatcagtggcgtcatctgtgggaaataacaagctatccccgttttt 13033964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 15427600 - 15427543
Alignment:
Q  337 gagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcccctatg 394  Q
    ||||||||||   |||||||||||||||||||||||||||||| || ||||| |||||    
T  15427600 gagaggaacccgtacaaataattcctctccaagaaaggcctctgcaaggtcctctatg 15427543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 15434218 - 15434161
Alignment:
Q  337 gagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcccctatg 394  Q
    ||||||||||   |||||||||||||||||||||||||||||| || ||||| |||||    
T  15434218 gagaggaacccgtacaaataattcctctccaagaaaggcctctgcaaggtcctctatg 15434161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 8081991 - 8081903
Alignment:
Q  78 tccaagaagt-cttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||||| || ||| ||||||  ||||||| ||| |||||| |||| || | ||||| |||||||| |||||||||||||||||||    
T  8081991 tccaagaagtactcttgacgcattctaccaccattcaaaccaccacatttaatgcaccggcagtcacctactgatcaggtacgatcaat 8081903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17282672 - 17282717
Alignment:
Q  1 ctcaaaccctcactctctctgatctctacttacttgagcgtcggagtg 48  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||    
T  17282672 ctcaaaccctcactct--ctgatctctactgacttgagcgtcggagtg 17282717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25239712 - 25239667
Alignment:
Q  1 ctcaaaccctcactctctctgatctctacttacttgagcgtcggagtg 48  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||    
T  25239712 ctcaaaccctcactctct--gatctctactgacttgagcgtcggagtg 25239667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 9901896 - 9901939
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||||| |||||||||||||||||  ||||||||    
T  9901896 ctctctgatctctactgacttgagcgtcggagtgtctgcaggta 9901939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 45313152 - 45313109
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||    
T  45313152 ctctctgatttctacttacttgagcgtcgaagtgcctgcaggta 45313109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 26780996 - 26781038
Alignment:
Q  16 tctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||| ||||||||||||||||||||||||| | ||||||||    
T  26780996 tctctggtctctacttacttgagcgtcggagtacctgcaggta 26781038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 9901994 - 9902042
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||| ||||||||| ||| | | ||||||||||||||||||||||||    
T  9901994 accaccacattcaaagcaccagcaatcaccttctgatcaggtacgatca 9902042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 4 - 392
Target Start/End: Complemental strand, 21802464 - 21802080
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||| | |  |||||             |||||||||||||||  |||||||||||||||    
T  21802464 aaaccctcactctctctgatctctacttacttgagcgtcgaagttcctataggtacacaccccc----atccgctccaagaagcattttggcgcatttca 21802369  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttt 203  Q
    |||||||| | |||| |||||||||||  |||  |||||||||||||||||| |||| || ||||||||||||||| ||||| ||||||| ||||||||     
T  21802368 ccaccactaaaaccatcgcattcaaagacccgacagtcaccttctgatcaggaacgaccagtggcgccgtctgtggaaaatacaagctcttcccgtttta 21802269  T
Q  204 atactcctaaaagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgaca 303  Q
    |||||||||||| | ||||||||| || ||||||||||| |||||||  ||||||| | | | |||||||||||||||||||||||| ||||||||| ||    
T  21802268 atactcctaaaaaccaaagctttcgaagaaattaccatggctgccaatagtgcccactcccatatacgaagtgagattcgcattcctgaaagggatggca 21802169  T
Q  304 tggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtccccta 392  Q
    || ||||||||||||||||| | ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  21802168 tgacatcttcaccttcacctagtgacacacctagagagaaaccagcacaaataattcctctccaagaaaggcctctgcaaggtccccta 21802080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 22703910 - 22703752
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||             |||||||||||||||  |||||||||||||||    
T  22703910 aaaccctcactctctcttatctctacttacttgagcgtcggagtgcctgcaggtacacaccccca---atccgctccaagaagcattttggcgcatttca 22703814  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||| | | |||||| ||||||||||||| |||||||||||||||||| ||| |||||    
T  22703813 ccaccactaaaatcaccgctttcaaagtaccggcagtcaccttctgatcaggaacgttcaat 22703752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 9549154 - 9549310
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |  |||||             |||||||||||||||  | ||| | |||| ||    
T  9549154 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcctataggtacacacccccc---atccgctccaagaagcatattgacacattcca 9549250  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||| | |||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  9549251 ccaccacttaaaccaccgcattcaaagcatcggcagtcaccttctgatcaggtacgatca 9549310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 29164854 - 29164708
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttcaccaccactcag 114  Q
    |||||||||||||||||||||||||||||||||   ||||||||             |||||||||||||||  |||||||||||||||||||| ||||     
T  29164854 ctctctgatctctacttacttgagcgtcggagtctctgcaggtacacagccccc---atccgctccaagaagcattttggcgcatttcaccacccctcaa 29164758  T
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaa 164  Q
    |||||| |||| |||| ||| | |||||||||||||||||||||||||||    
T  29164757 accaccacatttaaagcacccgcagtcaccttctgatcaggtacgatcaa 29164708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 18185516 - 18185413
Alignment:
Q  132 accggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaa-tataagctctccccgtttttatactcctaaaagctaaagctttccaa 230  Q
    |||||||||||||||||||||| ||||||||| |||   |||| |||||||| ||||||||||||||||||| |||||||||||| | |||||||| |||    
T  18185516 accggtagtcaccttctgatcatgtacgatcagtgggatcgtcggtgggaaaatataagctctccccgttttcatactcctaaaaaccaaagctttgcaa 18185417  T
Q  231 aaaa 234  Q
    ||||    
T  18185416 aaaa 18185413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 22705619 - 22705473
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||             |||||||| ||||||  |||||||||||||||    
T  22705619 aaaccctcactctctctgatctctacttacttgagtgtcggagtgcctgcaggta---cacaccccccatccgctcaaagaagcattttggcgcatttca 22705523  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatca 153  Q
    |||||| | | || ||||| ||||||| || || ||||||||||||||||    
T  22705522 ccaccattaaaactaccgctttcaaagcactggcagtcaccttctgatca 22705473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 30770434 - 30770525
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||||||||  ||||||||||||||||||||||| | |||||||||||| ||| | ||  |||||||||||||||| |||||||||    
T  30770434 atccgctccaagaagcattttggcgcatttcaccaccactaaaaccaccgcattcgaagcatcgacagtcaccttctgatcatgtacgatca 30770525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 1855552 - 1855493
Alignment:
Q  145 ttctgatcaggtacgatcaatggcgccgtctgtgggaaat-ataagctctccccgttttt 203  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  1855552 ttctgatcaggtacgatcagtggcgctgtctgtgggaaataataagctctccccgttttt 1855493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 2250272 - 2250333
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaa 164  Q
    ||||||||||| |||||| |||| |||| ||||| |||||||||||||||||||||||||||    
T  2250272 accaccactcaaaccaccacatttaaagcaccggcagtcaccttctgatcaggtacgatcaa 2250333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18185642 - 18185587
Alignment:
Q  1 ctcaaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||| ||||||||    
T  18185642 ctcaaaccctcactctct--gatctctactgacttgagcgtcggagtgcctgcaggta 18185587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 28794222 - 28794264
Alignment:
Q  16 tctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  28794222 tctctgatctctactgacttgagcgtcggagtgcgtgcaggta 28794264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 15634785 - 15634724
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaa 164  Q
    ||||||| ||| |||||| |||| |||| |||||| ||||| ||||||||||||||||||||    
T  15634785 accaccattcaaaccaccacatttaaagcaccggtggtcactttctgatcaggtacgatcaa 15634724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 20093551 - 20093506
Alignment:
Q  3 caaaccctcactctctctgatctctacttacttgagcgtcggagtg 48  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||    
T  20093551 caaacccgcactttctctgatctctactgacttgagcgtcggagtg 20093506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 30765222 - 30765270
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||||||||| ||||  | ||||||||||||||||||||||||    
T  30765222 accaccgcattcaaagcaccgacaatcaccttctgatcaggtacgatca 30765270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 21310842 - 21310875
Alignment:
Q  132 accggtagtcaccttctgatcaggtacgatcaat 165  Q
    ||||||||| ||||||||||||||||||||||||    
T  21310842 accggtagtgaccttctgatcaggtacgatcaat 21310875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47295863 - 47295909
Alignment:
Q  1 ctcaaaccctcactctctctgatctctacttacttgagcgtcggagtgc 49  Q
    ||||||||||||||||  |||||||||||| |||||| |||||||||||    
T  47295863 ctcaaaccctcactct--ctgatctctactgacttgaacgtcggagtgc 47295909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 30770388 - 30770424
Alignment:
Q  22 atctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||||||||||||||||| || |||||    
T  30770388 atctctacttacttgagcgtcggagtgcctgtaggta 30770424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 72 - 392
Target Start/End: Original strand, 19860300 - 19860620
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgcc 171  Q
    |||||||||| ||||  ||||||||||||||||||||||||| |||||| |||| |||| ||||| | |||||||||||||||||||||||| |||| |     
T  19860300 atccgctccaggaagcattttggcgcatttcaccaccactcaaaccaccacatttaaagcaccggcaatcaccttctgatcaggtacgatcagtggcact 19860399  T
Q  172 gtctgtgggaaatataagctctccccgtttttatactcctaaaagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacg 271  Q
    ||||| ||||||||||||||||||||||| ||||||| |||||| | ||||||||| | |||||||||||| |||||||||||||||||| | |||||||    
T  19860400 gtctgcgggaaatataagctctccccgttgttatacttctaaaaaccaaagctttctagaaaattaccatggctgccaacggtgcccattcccagatacg 19860499  T
Q  272 aagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaa 371  Q
    ||| ||| ||||||||||||| |||||||||||| ||||||||||||| | ||| || |||| ||||||||||||    |||||| ||||||||||||||    
T  19860500 aagcgaggttcgcattcctcagagggatgacatgacatcttcaccttctcatggggatacacctagagaggaacctgtgcaaatagttcctctccaagaa 19860599  T
Q  372 aggcctctacagggtccccta 392  Q
    |||||||| ||||||||||||    
T  19860600 aggcctctgcagggtccccta 19860620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 115 - 388
Target Start/End: Complemental strand, 18735909 - 18735635
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaa-tataagctctccccgtttttatactcctaa 213  Q
    ||||| |||||||||| ||||  | ||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||     
T  18735909 accactgcattcaaagcaccgacaatcaccttatgatcaggtacgatcagtggcgccatctgtgggaaaatataagctctccctgtttttatactcctag 18735810  T
Q  214 aagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttc 313  Q
    || | ||| |||||||| |||||||||||  |||||||| |||  ||| | |||||||| ||||||||||||| || ||| | ||||||||  |||||||    
T  18735809 aaaccaaatctttccaagaaattaccatggttgccaacgatgcaaattcccagatacgatgtgagattcgcatcccccaacgagatgacatcacatcttc 18735710  T
Q  314 accttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcc 388  Q
    |||||| | ||| || |||| |||||||||||||  ||  |||||||||||||||||||||||||| || |||||    
T  18735709 accttctcttggggatacacctagagaggaaccagtactgataattcctctccaagaaaggcctctgcaaggtcc 18735635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 8306078 - 8305920
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||             |||||||| ||||||  |||||  ||||||||    
T  8306078 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcctgcaggtacacacccccc---atccgctcaaagaagcattttgttgcatttca 8305982  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||| |||||||| ||||||||| ||||  ||||||||||||||||||||||||||||    
T  8305981 ccaccactaagaccaccacattcaaagcaccgacagtcaccttctgatcaggtacgatcaat 8305920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 15119904 - 15120060
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||             ||||||||||||||   |||||||||||||||    
T  15119904 aaacccccactctctctgatctctacttacttgagcgtcggagtgcctgcaggtacacaccccc----atccgctccaagaaacattttggcgcatttca 15119999  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaa 164  Q
    |||||||| | | |||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  15120000 ccaccactaaaatcaccgcattcaaagcaccggcagtcaccttctgattaggtacgatcaa 15120060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 24438779 - 24438915
Alignment:
Q  24 ctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgca 123  Q
    |||||||||||||||||||||||||||||||||||             ||| |||||||||||  ||||||||||||||||||||||| | |||||||||    
T  24438779 ctctacttacttgagcgtcggagtgcttgcaggtagacaccccac---atctgctccaagaagcattttggcgcatttcaccaccactgaaaccaccgca 24438875  T
Q  124 ttcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||| ||||  ||||||||||||||||||||||||||    
T  24438876 ttcaaagcaccgacagtcaccttctgatcaggtacgatca 24438915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 4409210 - 4409063
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||             |||||||||||||||  |||||||||||||||    
T  4409210 aaaccctcactctctctgatctctacttacttgagtgtcggagtgcctgcaggtacacacacccc---atccgctccaagaagcattttggcgcatttca 4409114  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcag 154  Q
    |||||||| | | | |||||||||||| ||||| ||||||||||| |||||    
T  4409113 ccaccactaaaatcgccgcattcaaagcaccggcagtcaccttctcatcag 4409063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 12738500 - 12738355
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttcaccaccactcag 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||||             |||||||||||||||  |||||||||||||||||||||||||     
T  12738500 ctctctgatctctacttacttgagcgtcggagtgcctgcaggtacacaccctcc---atccgctccaagaagcattttggcgcatttcaccaccactcaa 12738404  T
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||| |||| |||| ||||  | |||| |||||||||||||||||||    
T  12738403 accaccacatttaaagcaccgacaatcactttctgatcaggtacgatca 12738355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 7968681 - 7968830
Alignment:
Q  5 aaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttcac 104  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||             ||||||||||||||    |||||||||||||||    
T  7968681 aaccctcactctctccgatctctacttacttgagcgtcggagtgcctgcaggta---gacaccccccatccgctccaagaaacactttggcgcatttcac 7968777  T
Q  105 caccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggta 157  Q
    ||||||| | |||||| ||||||||| ||||  | ||||||||||||||||||    
T  7968778 caccacttaaaccaccacattcaaagcaccgacaatcaccttctgatcaggta 7968830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 18043354 - 18043199
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||| |||||||||||||||||| |||||| ||||||||             | |||||||||||||   |||||||||||| |    
T  18043354 aaaccctcactctctctgatttctacttacttgagcgtcagagtgcctgcaggtacacaccccc----agccgctccaagaagcaatttggcgcatttta 18043259  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||| |   |||||||||||||| ||||| | ||||||||||||||||||||||||    
T  18043258 ccaccactaaatgcaccgcattcaaagcaccggcaatcaccttctgatcaggtacgatca 18043199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 3876250 - 3876188
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    ||||||||| | |||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  3876250 accaccacttaaaccaccgcattcaaagcaccggcattcaccttctgatcaggtacgatcaat 3876188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 15319261 - 15319319
Alignment:
Q  106 accactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaa 164  Q
    |||||||| |||||| ||||||||| ||||| ||| |||||||||||||||||||||||    
T  15319261 accactcaaaccacctcattcaaagcaccggcagttaccttctgatcaggtacgatcaa 15319319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 14910610 - 14910571
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgca 54  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  14910610 ctctctgatctctacttacttgagcgtcggagtgcctgca 14910571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 29482596 - 29482553
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  29482596 ctctctgatctctacttacttgagcgtcggagcgcctgcaggta 29482553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 29482511 - 29482449
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    ||||||||||| ||||||| ||||||||||  |  ||||||||||||||||||||| ||||||    
T  29482511 accaccactcaaaccaccgtattcaaagtattgacagtcaccttctgatcaggtacaatcaat 29482449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 372739 - 372769
Alignment:
Q  134 cggtagtcaccttctgatcaggtacgatcaa 164  Q
    |||||||||||||||||||||||||||||||    
T  372739 cggtagtcaccttctgatcaggtacgatcaa 372769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 14479999 - 14479957
Alignment:
Q  16 tctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||    
T  14479999 tctctgatctctactgacttcagcgtcggagtgcctgcaggta 14479957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 19860246 - 19860280
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgc 49  Q
    |||||||||||||||||||||||||||| ||||||    
T  19860246 ctctctgatctctacttacttgagcgtcagagtgc 19860280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 23574399 - 23574365
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgc 49  Q
    ||||||||||||||| |||||||||||||||||||    
T  23574399 ctctctgatctctacatacttgagcgtcggagtgc 23574365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 19885604 - 19885567
Alignment:
Q  138 agtcaccttctgatcaggtacgatcaatggcgccgtct 175  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  19885604 agtcaccttctgatcagatacgatcagtggcgccgtct 19885567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 12936521 - 12936557
Alignment:
Q  127 aaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||| |||||||| |||||||||||||||||||||||    
T  12936521 aaagcaccggtagccaccttctgatcaggtacgatca 12936557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 18014733 - 18014809
Alignment:
Q  89 ttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    ||||| ||||||| ||||||||||| |||||| |||| |||| ||||  | | ||||| |||| |||||||||||||    
T  18014733 ttttgacgcattttaccaccactcaaaccacctcatttaaagcaccgccaattaccttttgattaggtacgatcaat 18014809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 72 - 392
Target Start/End: Complemental strand, 391321 - 390998
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgcc 171  Q
    |||||||||||||||  || || || ||| |||| ||||||| |||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||    
T  391321 atccgctccaagaagcattctgacgtattccaccgccactcaaaccatcgcatttaaagcaccgatagtcaccttctgatcaggtacgatcagtggcgcc 391222  T
Q  172 gtctgtgggaaatataagctctccccgtttttatactcctaaaagctaaagctttc---caaaaaattaccatgactgccaacggtgcccattactagat 268  Q
    |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||    |||||||||| ||| |||||||||||||||||| ||||||    
T  391221 gtctgtgggaaatataagctctccccatttttatactcctaaaaaccaaagctttcgaaaaaaaaattactatggctgccaacggtgcccattcctagat 391122  T
Q  269 acgaagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaa 368  Q
    |||||||||||||||||| ||||||  ||||| |||| |||||||||| || ||||| || | ||  ||||||||||||   ||||||||||||||||||    
T  391121 acgaagtgagattcgcatccctcaacaggatggcatgacatcttcaccgtctcctggggatatacccagagaggaaccagtgcaaataattcctctccaa 391022  T
Q  369 gaaaggcctctacagggtccccta 392  Q
    ||||||||||||||||||||||||    
T  391021 gaaaggcctctacagggtccccta 390998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 380675 - 380614
Alignment:
Q  102 caccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||||| ||||||||||| |||| |||   ||||||||| ||||||||||||||||    
T  380675 caccaccactcaaaccaccgcatttaaagcaccaacagtcaccttttgatcaggtacgatca 380614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 8e-77; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 115 - 392
Target Start/End: Original strand, 25134213 - 25134490
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttttatactcctaaa 214  Q
    |||||| ||||||||  ||||  ||||||||||| ||||| |||||||| |||| ||||||||||||| |||||  ||||||||||||||||||||||||    
T  25134213 accaccacattcaaaccaccgacagtcaccttctaatcagatacgatcagtggcaccgtctgtgggaagtataaattctccccgtttttatactcctaaa 25134312  T
Q  215 agctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttca 314  Q
    | | ||||||| |||||||||||||||| |||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||| |||| ||||||||    
T  25134313 aaccaaagcttaccaaaaaattaccatggctgccaacggtgcccattcccagataggaagtgagatttgcattcctcaaagggatggcatgacatcttca 25134412  T
Q  315 ccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtccccta 392  Q
    ||||||||||||||||||| || |||||||| | |||||||||||| |||  ||||||||||  |  |||||||||||    
T  25134413 ccttcacctggagacacacttaaagaggaactagcacaaataattcttctttaagaaaggccaatgtagggtccccta 25134490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 23929802 - 23929443
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttcaccaccactcag 114  Q
    |||||||||||||||||||||||||||| |||||| ||||||||             |||||||||||||||  || || || |||  |||||||||||     
T  23929802 ctctctgatctctacttacttgagcgtcagagtgcctgcaggtacacaccccc----atccgctccaagaagcattctgacgtattctaccaccactcaa 23929707  T
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttttatactcctaaa 214  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||   ||| |||||    
T  23929706 accaccgcattcaaagcaccgggagtcaccttctgatcaggtacgaccagtggcgccgtctgtgggaaatataagctctccccattttcgcactactaaa 23929607  T
Q  215 agctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttca 314  Q
    | ||||||||||||||||||||| |||| ||||||||| |||| | | |  ||||||||||||||||||||| |||||| | ||||  ||| |||| |||    
T  23929606 aactaaagctttccaaaaaattatcatggctgccaacgatgccaactccccgatacgaagtgagattcgcatccctcaacgagatggtatgacatcatca 23929507  T
Q  315 ccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctct 379  Q
    ||||| ||||| ||  ||| |||||||||||| | ||||||| ||||||||||||||||||||||    
T  23929506 ccttctcctgg-gatccacctagagaggaaccgatacaaatagttcctctccaagaaaggcctct 23929443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 4 - 376
Target Start/End: Original strand, 25134119 - 25134474
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||||| | ||||||             ||||||||||||||| | ||||||||||| ||    
T  25134119 aaaccatcattctctctgatctatacttacttgagcgttggagtgcctacaggta----cacatccctatccgctccaagaag-catttggcgcattcca 25134213  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttt 203  Q
    ||||||            ||||||||  ||||  ||||||||||| ||||| |||||||| |||| ||||||||||||| |||||  |||||||||||||    
T  25134214 ccacca------------cattcaaaccaccgacagtcaccttctaatcagatacgatcagtggcaccgtctgtgggaagtataaattctccccgttttt 25134301  T
Q  204 atactcctaaaagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgaca 303  Q
    |||||||||||| | ||||||| |||||||||||||||| |||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||| ||    
T  25134302 atactcctaaaaaccaaagcttaccaaaaaattaccatggctgccaacggtgcccattcccagataggaagtgagatttgcattcctcaaagggatggca 25134401  T
Q  304 tggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcc 376  Q
    || ||||||||||||||||||||||||||| || |||||||| | |||||||||||| |||  ||||||||||    
T  25134402 tgacatcttcaccttcacctggagacacacttaaagaggaactagcacaaataattcttctttaagaaaggcc 25134474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 132 - 390
Target Start/End: Complemental strand, 27347062 - 27346806
Alignment:
Q  132 accggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttttatactcctaaaagctaaagctttccaaa 231  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||    
T  27347062 accggcagtcaccttctgatcaggtacgatcagtggcgccgtctgtgggaaatataagctttccccgtttttatactcctaaaaaccaaagctttccaaa 27346963  T
Q  232 aaa-ttaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcacctggagaca 330  Q
    ||| |||  ||| |||||||| ||| |   | |||||||||||||||| | ||||| |||||| | |||| |||| |||| |||||||||||||  ||      
T  27346962 aaagttaatatggctgccaactgtgtc---tcctagatacgaagtgaggtacgcatccctcaacgagatggcatgacatcctcaccttcacctgtggatt 27346866  T
Q  331 cacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcccc 390  Q
    |||  || |||||||||| ||||||| ||||||||||| |||| |||||  |||||||||    
T  27346865 cacccagggaggaaccaatacaaatagttcctctccaacaaagacctctgtagggtcccc 27346806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 115 - 392
Target Start/End: Original strand, 22453106 - 22453383
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttttatactcctaaa 214  Q
    ||||||||| | |||  ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  22453106 accaccgcaattaaaacaccggcagtcaccttctgatcaggtacgatcagtggcgccgtctgtgggaaatataagctcttcccgtttttatactactaaa 22453205  T
Q  215 agctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttca 314  Q
    | | ||||||||| |||||| ||||||||||||||||||||||   |   |||||||||||||  ||||  | | |||| | |  |  ||| ||||||||    
T  22453206 aaccaaagctttcaaaaaaactaccatgactgccaacggtgccagctcacagatacgaagtgaagttcgtgtccttcaacgaggcggaatgacatcttca 22453305  T
Q  315 ccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtccccta 392  Q
    ||| | |||   |  |||| |||||||||||| | ||||||||| |||||| ||||||||||||| || |||||||||    
T  22453306 cctactcctttgggtacacctagagaggaacccatacaaataatccctctcgaagaaaggcctctgcaaggtccccta 22453383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 3770274 - 3770117
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||  |||||||||||||||    
T  3770274 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggt----tcacacccccatccgctccaagaagcattttggcgcatttca 3770179  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||| | |||||| ||||||||| ||||| || |||||||||||||||||||||||||    
T  3770178 ccaccactaaaaccaccacattcaaagcaccggcagccaccttctgatcaggtacgatcaat 3770117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 41266382 - 41266536
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||             ||||||||||| |||  |||||||||||||||    
T  41266382 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcctgcaggtacacccccccc---atccgctccaataagcattttggcgcatttca 41266478  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgat 161  Q
    |||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  41266479 ccaccactaaaaccaccacattcaaagcaccggtagtcaccttctgatcaggtacgat 41266536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 29568261 - 29568141
Alignment:
Q  77 ctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctg 176  Q
    ||||||||||  || || ||||||  ||||||||  | |||||||||||||||| ||||    |||||||||||||||||||||||| ||||||||||||    
T  29568261 ctccaagaagcattctgacgcattctaccaccacctaaaccaccgcattcaaagcaccgacgatcaccttctgatcaggtacgatcagtggcgccgtctg 29568162  T
Q  177 tgggaaatataagctctcccc 197  Q
    |||||||||||||||||||||    
T  29568161 tgggaaatataagctctcccc 29568141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 23756004 - 23756163
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||             |||||||| ||||||   ||||||| ||||||    
T  23756004 aaaccctcactctctctgatctctacttacttgagcgtcagagtgcctgcaggta--cacacccccccatccgctctaagaagcaatttggcgaatttca 23756101  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||| | |||||||||||||||  ||||  ||| ||||||||||||||||| ||||||    
T  23756102 ccaccactaaaaccaccgcattcaaaacaccgacagttaccttctgatcaggtactatcaat 23756163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 26159219 - 26159375
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||             |||||||||| |||    |||||||||| |||    
T  26159219 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcctgcagata---cacaccccccatccgctccacgaaacactttggcgcatctca 26159315  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||| | |||||||||||||||| | ||| |  |||||||||||||||||||||||    
T  26159316 ccaccacttaaaccaccgcattcaaagcatcggcatccaccttctgatcaggtacgatca 26159375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 42534370 - 42534463
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||||||||||  || || ||||||  ||||||||||| |||| | ||||||||| ||||| ||||||||| ||||||||||||||||||    
T  42534370 atccgctccaagaagcattctgacgcattctaccaccactcaaaccatcacattcaaagcaccggaagtcaccttatgatcaggtacgatcaat 42534463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 29568136 - 29568052
Alignment:
Q  304 tggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcc 388  Q
    |||||||||||||||| ||||| || ||||  ||||||||||||| ||||||||||||||| ||| |||||||||| || |||||    
T  29568136 tggcatcttcaccttctcctggggatacacccagagaggaaccaatacaaataattcctctacaacaaaggcctctgcaaggtcc 29568052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 3105126 - 3105066
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||| | ||||||||||||||||||| || ||||||||| |||| |||||||||||    
T  3105126 accaccactaaaaccaccgcattcaaagtactggcagtcaccttttgattaggtacgatca 3105066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 12094043 - 12093997
Alignment:
Q  138 agtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaat 184  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  12094043 agtcaccttatgatcaggtaggatcagtggcgccgtctgtgggaaat 12093997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 42534317 - 42534350
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtg 48  Q
    ||||||||||||||||||||||||||||||||||    
T  42534317 ctctctgatctctacttacttgagcgtcggagtg 42534350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 17745927 - 17745860
Alignment:
Q  136 gtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttt 203  Q
    |||||||||||||||||||||| ||||| |  | |||||| ||| ||||| ||||| |||||||||||    
T  17745927 gtagtcaccttctgatcaggtatgatcactaacaccgtctttggtaaatacaagctatccccgttttt 17745860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 27347176 - 27347142
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgc 49  Q
    |||||||||||||||| ||||||||||||||||||    
T  27347176 ctctctgatctctactgacttgagcgtcggagtgc 27347142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 19092730 - 19092685
Alignment:
Q  13 ctctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||||||| |||||||||| ||||||  ||||||||    
T  19092730 ctctctctgatctctactgacttgagcgttggagtgtctgcaggta 19092685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 45279233 - 45279205
Alignment:
Q  135 ggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||||||||||||||||||||||    
T  45279233 ggtagtcaccttctgatcaggtacgatca 45279205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 45286632 - 45286604
Alignment:
Q  135 ggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||||||||||||||||||||||    
T  45286632 ggtagtcaccttctgatcaggtacgatca 45286604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 4 - 257
Target Start/End: Original strand, 18040666 - 18040916
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||||             |||||||| ||||||  |||  ||||||||||    
T  18040666 aaaccttcactctctctgatctctgcttacttaagcgtcggagtgcctgcaggtacacacccctc---atccgctctaagaagcatttcagcgcatttca 18040762  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttt 203  Q
    |||||||||| |||||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18040763 ccaccactcaaaccaccgcattcaaggcaccggcagtcaccttctgatcaggtacgatcagtggcgccgtctgtgggaaatataagctctccccgttttt 18040862  T
Q  204 atactcctaaaagctaaagctttccaaaaaattaccatgactgccaacggtgcc 257  Q
    ||||| |||||| | |||||||||||||||||||||||| || ||||| |||||    
T  18040863 atacttctaaaaaccaaagctttccaaaaaattaccatggctaccaacagtgcc 18040916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 108 - 379
Target Start/End: Original strand, 22618463 - 22618735
Alignment:
Q  108 cactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttttatac 207  Q
    |||||| ||||| ||||| |||| ||||| |||||||||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||  |    
T  22618463 cactcaaaccactgcattaaaagcaccggcagtcaccttctgatcaggtacgatcagtggcgccgtctacgggaaatacaagctctccccgtttttactc 22618562  T
Q  208 tcctaaaagctaaagctttccaaaaaatt-accatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatgg 306  Q
      |||||| | ||||||||||||||||||  ||||  |||||||||||||| | | | | ||||||||||||||||| || |||||| | ||||  |||     
T  22618563 cactaaaaaccaaagctttccaaaaaattctccatagctgccaacggtgccaactcccatatacgaagtgagattcgtatccctcaacgtgatggtatga 22618662  T
Q  307 catcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctct 379  Q
    |||| |||||||| | ||| |  |||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  22618663 catcctcaccttctcttgggggtacacctagagaggaaccaatacaaatagttcctctccaagaaaggcctct 22618735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 103 - 388
Target Start/End: Complemental strand, 24060477 - 24060192
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttt 202  Q
    ||||||||||| ||||||||||| |||| ||||  ||||||||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||    
T  24060477 accaccactcaaaccaccgcatttaaagcaccgacagtcaccttctgatcaggtacaatcagtggcgccgtctgtggg-aatacaagctctccccgtttt 24060379  T
Q  203 tatactcctaaaagctaaagctttccaaaaaa-ttaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaa-gggatg 300  Q
    ||   | |||||| | |||||||||||||||| ||||||||  ||||||||||||||  |  ||||||||||||||  |||| || ||||||| | ||||    
T  24060378 taccttgctaaaaaccaaagctttccaaaaaatttaccatggttgccaacggtgcccgctcatagatacgaagtgaagttcgtatccctcaaacgcgatg 24060279  T
Q  301 acatggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcc 388  Q
      ||| | |||||||| || ||||  |  ||||  |||||||||||   ||| |||||||||||||||||||||||||||||||||||    
T  24060278 gtatgacgtcttcaccgtctcctgtgggtacac-cagagaggaacctgtacagataattcctctccaagaaaggcctctacagggtcc 24060192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 265 - 392
Target Start/End: Original strand, 18043448 - 18043574
Alignment:
Q  265 agatacgaagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctct 364  Q
    ||||| |||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  18043448 agatatgaagtgagattcgcattcctcaaagg-atggcatggcatcttcatgttcacctggagacacacctagagaggaaccagcacaaataattcctct 18043546  T
Q  365 ccaagaaaggcctctacagggtccccta 392  Q
    ||||||||||||||| ||||||| ||||    
T  18043547 ccaagaaaggcctctgcagggtctccta 18043574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 2085928 - 2086086
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||             |||||||||||||||   ||||||||||||||    
T  2085928 aaaccctcactctctctgatctctacttacttgagcatcggagtgcctgcaggtacacacccccc---atccgctccaagaagcactttggcgcatttca 2086024  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||||  ||||||||||    
T  2086025 ccaccactcaaaccaccgcattcaaagcaccggcagtcaccttctgatcatatacgatcaat 2086086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 17775722 - 17775566
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||             |||||||||||||||  |||||||||||||||    
T  17775722 aaaccctcactctctctgatctctacttacttgagcgtcgaagtgcctgcaggtacacacccccc---atccgctccaagaagcattttggcgcatttca 17775626  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||| | ||||||| |||||||| | | | ||||||||||||||||||||||||||    
T  17775625 ccaccactaaaaccaccggattcaaagcatcaggagtcaccttctgatcaggtacgatca 17775566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 103 - 388
Target Start/End: Original strand, 14058390 - 14058674
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttt 202  Q
    |||| |||||| |||| |||||| |||| ||||| ||||||||||||||||||||||||||  |||||||||||||  ||||| ||||||| || |||||    
T  14058390 accagcactcaaaccatcgcatttaaagcaccggcagtcaccttctgatcaggtacgatcagcggcgccgtctgtgacaaatacaagctct-ccagtttt 14058488  T
Q  203 tatactcctaaaagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgac 302  Q
    ||   | |||||| | ||| ||||||| ||| |||||||| || ||||| ||||    |   |||||||||||||  |||  || |||||| | ||||      
T  14058489 taccttactaaaaaccaaaactttccagaaatttaccatggctaccaacagtgctagctcacagatacgaagtgaagttcatatccctcaacgcgatggg 14058588  T
Q  303 atggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcc 388  Q
    ||| ||||||||||||| ||||  |  |||| ||||||||||||   ||||||||||||||| |||||||||||||| || |||||    
T  14058589 atgacatcttcaccttctcctgtgggtacacctagagaggaacccgtacaaataattcctcttcaagaaaggcctctgcaaggtcc 14058674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 32009199 - 32009353
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||             ||||||||||||||| | | ||||||||||||    
T  32009199 aaaccctcactctctatgatctctacttacttgagcgtcggagtgcctgcaggtacacaccccc----atccgctccaagaag-catctggcgcatttca 32009293  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||| |||| | ||||||||| ||||  | ||||||||||||||||||||||||    
T  32009294 ccaccactcaaaccatcacattcaaagcaccgacaatcaccttctgatcaggtacgatca 32009353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 18574206 - 18574360
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| |||||||||             |||||||||||||||  |||| ||||||||||    
T  18574206 aaactctcactctctttgatctctacttacttgagcgtcggagtgtttgcaggtacacaccctc----atccgctccaagaagcattttagcgcatttca 18574301  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatc 162  Q
    |||||||||| ||||||| |||||||| |||   |||||||||||||||| ||||||||    
T  18574302 ccaccactcaaaccaccgtattcaaagcaccaacagtcaccttctgatcatgtacgatc 18574360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 10532975 - 10533129
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||||||| || |||||||||||||||||||||||||| |||||| ||||||||             ||||||||||| ||    ||||||||||||||    
T  10532975 aaaccctcattccctctgatctctacttacttgagcgtctgagtgcctgcaggtacacacccc-----atccgctccaaaaaaaactttggcgcatttca 10533069  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||| | |||||| ||||||||| ||||| |||||||||||||||| |||||||||    
T  10533070 ccaccacttaaaccaccacattcaaagcaccggcagtcaccttctgatcatgtacgatca 10533129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 15604382 - 15604320
Alignment:
Q  141 caccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttt 203  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  15604382 caccttctggtcaggtacgatcagtggcgccgtctgtgggaaatacaagctctccccgttttt 15604320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 15612733 - 15612671
Alignment:
Q  141 caccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttt 203  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  15612733 caccttctggtcaggtacgatcagtggcgccgtctgtgggaaatacaagctctccccgttttt 15612671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 41281089 - 41281149
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  41281089 accaccactcaaaccaccgcattcaaagtaccggcagtcaccttctaatcaggtacgatca 41281149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 24033710 - 24033621
Alignment:
Q  76 gctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||||||  ||||||||||||||||||||||||| ||||| ||||| |||    ||  ||||||||||| ||||||||||||||||    
T  24033710 gctccaagaagcattttggcgcatttcaccaccactcaaaccactgcatttaaaacgacgacagtcaccttcttatcaggtacgatcaat 24033621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 7454861 - 7454904
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  7454861 ctctctgatctctacttacttgagcgtcggagtgcctgcaggta 7454904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 33273797 - 33273845
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||||||||| ||||  ||||||||||||||||| ||||||||    
T  33273797 accaccgcattcaaagcaccgacagtcaccttctgatcagatacgatca 33273845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 7999655 - 7999612
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||||| |||||||| ||||||||| ||||||||    
T  7999655 ctctctgatctctactgacttgagcatcggagtgcatgcaggta 7999612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 41281003 - 41281046
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||||||||||||| || |||||| |||||||||    
T  41281003 ctctctgatctctacttacttgagtgttggagtgtttgcaggta 41281046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1788668 - 1788622
Alignment:
Q  1 ctcaaaccctcactctctctgatctctacttacttgagcgtcggagtgc 49  Q
    ||||||||||||||||||  |||||||||| |||| |||||||||||||    
T  1788668 ctcaaaccctcactctct--gatctctactgactttagcgtcggagtgc 1788622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 13172768 - 13172837
Alignment:
Q  135 ggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtggg-aaatataagctctccccgttttt 203  Q
    |||||| |||||||||||| ||||||||| ||| || ||||||||| ||||| ||| | |||||||||||    
T  13172768 ggtagttaccttctgatcacgtacgatcagtggtgctgtctgtgggaaaatacaagttatccccgttttt 13172837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 7454913 - 7455005
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaa 164  Q
    |||||||||||||||  || || || |||  ||||||||  | ||||| |||||||||| ||||  | |||| ||||||||||||||||||||    
T  7454913 atccgctccaagaagcattatgtcgtattctaccaccacctaaaccactgcattcaaagcaccgacaatcacattctgatcaggtacgatcaa 7455005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 11709370 - 11709330
Alignment:
Q  18 tctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||| ||||||||||||| |||| ||||||||    
T  11709370 tctgatctctactgacttgagcgtcggggtgcctgcaggta 11709330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 25820676 - 25820644
Alignment:
Q  132 accggtagtcaccttctgatcaggtacgatcaa 164  Q
    ||||| |||||||||||||||||||||||||||    
T  25820676 accggcagtcaccttctgatcaggtacgatcaa 25820644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 388
Target Start/End: Complemental strand, 253318 - 252948
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttcaccaccactcag 114  Q
    ||||||||||||||||||||||||||||||||||  ||||||||             ||||| |||||||||  || || | ||||| ||||  |||||     
T  253318 ctctctgatctctacttacttgagcgtcggagtgtctgcaggtacacacccccc---atccgttccaagaagcattctgacacattttaccataactcaa 253222  T
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttttatactcctaaa 214  Q
    |||||||||||||||| ||| | | |||||||||||| ||||||||||| | ||||||||| ||| || |||||||||||||| |||||| |||  ||||    
T  253221 accaccgcattcaaagcaccagcaatcaccttctgattaggtacgatcagttgcgccgtctatggaaactataagctctccccatttttacactattaaa 253122  T
Q  215 agctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttca 314  Q
    | | |||||||||||  ||||||||||| ||||||| |||||| | | | |||||||||||||||||||||| |||||| ||||||  ||| ||||||||    
T  253121 aaccaaagctttccaccaaattaccatggctgccaatggtgccaactcccagatacgaagtgagattcgcatccctcaacgggatggtatgacatcttca 253022  T
Q  315 ccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcc 388  Q
    ||||| | |||||  || | |||||||||||||| ||||||| |||||| ||||||||||||||| || |||||    
T  253021 ccttctcttggaggtacgcctagagaggaaccaatacaaatagttcctcaccaagaaaggcctctgcaaggtcc 252948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 242591 - 242532
Alignment:
Q  105 caccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaa 164  Q
    ||||| ||| |||||||||||||||| |  || |||||||||||||||| ||||||||||    
T  242591 caccattcaaaccaccgcattcaaagcaatggcagtcaccttctgatcacgtacgatcaa 242532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 132 - 390
Target Start/End: Complemental strand, 23495240 - 23494982
Alignment:
Q  132 accggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttttatactcctaaaagctaaagctttccaaa 231  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  23495240 accgatagtcaccttctgatcaggtacgatcagtggcgccgtctgtgggaaatataagctctccccgtttttatactcctaaaaaccaaagctttccaaa 23495141  T
Q  232 aaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcacctggagacac 331  Q
    ||||||  ||| |||||||||||| | ||| | |||||||||||||| | ||||| |||||| |||||| | || |||| |||||||||| ||  ||       
T  23495140 aaattaatatggctgccaacggtgtcaattcccagatacgaagtgaggtacgcatccctcaacgggatggcgtgacatcctcaccttcacttgtggattg 23495041  T
Q  332 acatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcccc 390  Q
    || ||| |||||||||   |||||| |||||| |||| ||||| ||||  |||||||||    
T  23495040 acctagggaggaaccagtgcaaatagttcctcaccaacaaaggtctctgtagggtcccc 23494982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 121 - 316
Target Start/End: Complemental strand, 42792386 - 42792189
Alignment:
Q  121 gcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatata--agctctccccgtttttatactcctaaaagct 218  Q
    |||||||||| ||||| | ||||||||||||||||||| |||| |||||| ||  ||||||||||||  ||||||| |||||||||||||||||||| |     
T  42792386 gcattcaaagcaccggcaatcaccttctgatcaggtactatcagtggcgctgttagtgggaaatatataagctctcaccgtttttatactcctaaaaacc 42792287  T
Q  219 aaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttcacc 316  Q
    |||||||||||||| | || |||||||||||| ||||||   |   ||||||||||||| |||||||| |||||| ||||||  ||| ||||||||||    
T  42792286 aaagctttccaaaatactagcatgactgccaatggtgccagctcacagatacgaagtgaaattcgcatccctcaacgggatggaatgacatcttcacc 42792189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 8244525 - 8244369
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||             |||||||||||||||  |||||||||||||||    
T  8244525 aaaccctcactctctctgatctatacttacttgagtgtcggagtgcctgcaggtacacatccccc---atccgctccaagaagcattttggcgcatttca 8244429  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||| | | |||||||||||||| ||||  ||||||||||||||||  ||||||||    
T  8244428 ccaccactaaaatcaccgcattcaaagcaccgacagtcaccttctgatcaaatacgatca 8244369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 5931204 - 5931046
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    ||||||||||||||||||||||||||| |||||||||||||||||  ||||||||             ||||| ||||| ||| | ||||| |||||  |    
T  5931204 aaaccctcactctctctgatctctactgacttgagcgtcggagtgtctgcaggtacacacggctccccatccgttccaacaag-cgtttggtgcattcta 5931106  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||| |||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  5931105 ccaccactcaaaccaccacattcaaagcaccggtagccaccttctgatcaggtacgatca 5931046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 22922236 - 22922380
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttcaccaccactcag 114  Q
    |||||||||||||||| |||||||||||||||||| ||||||||             |||||||||||||||  || || | ||||  ||||||||| |     
T  22922236 ctctctgatctctact-acttgagcgtcggagtgcctgcaggtacacaccctcc---atccgctccaagaagcattctgacacattctaccaccacttaa 22922331  T
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||||    
T  22922332 accaccgcatttaaagcaccggcagtcaccttctgatcaggtacgatca 22922380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 19330157 - 19330232
Alignment:
Q  88 cttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||| ||||||  ||||||||||| ||||||||||| |||| ||||  ||||||||||||||||||||||||||    
T  19330157 cttttgacgcattctaccaccactcaaaccaccgcatttaaagcaccgacagtcaccttctgatcaggtacgatca 19330232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 22922932 - 22923023
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||||||||  || || | ||||  ||||||||| | ||||||||||| |||| ||||| ||||||||||||||||||||||||||    
T  22922932 atccgctccaagaagcattctgacacattctaccaccacttaaaccaccgcatttaaagcaccggcagtcaccttctgatcaggtacgatca 22923023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 24095254 - 24095168
Alignment:
Q  78 tccaagaagt-cttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||| || ||| |||||| || ||||||||| ||||||||||| |||| ||||   |||||||||||||||||||||||||    
T  24095254 tccaagaagtactcttgacgcattccagcaccactcaaaccaccgcatttaaagcaccgcccgtcaccttctgatcaggtacgatca 24095168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36712831 - 36712886
Alignment:
Q  1 ctcaaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||||    
T  36712831 ctcaaaccctcactct--ctgatctctactaacttgagcgtcggagtgcctgcaggta 36712886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 26377337 - 26377385
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  26377337 accaccgcattcaaagcaccgacagtcaccttctgatcaggtacgatca 26377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 41037849 - 41037892
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  41037849 ctctctgatctctacttacttgggcgtcggagtgcgtgcaggta 41037892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 15620489 - 15620539
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||||||||    
T  15620489 accaccgcattcaaagcaccggcaatcaccttctgattaggtacgatcaat 15620539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 5590891 - 5590930
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgca 54  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  5590891 ctctctgatctctactgacttgagcgtcggagtgcctgca 5590930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 19330087 - 19330118
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggag 46  Q
    ||||||||||||||||||||||||||||||||    
T  19330087 ctctctgatctctacttacttgagcgtcggag 19330118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 22922833 - 22922875
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  22922833 ctctctgatctctact-acttgagcgtcggagtgcctgcaggta 22922875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 23495354 - 23495311
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||    
T  23495354 ctctctgatctctactgacttgagcgttggagtgcctgcaggta 23495311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 28421741 - 28421788
Alignment:
Q  138 agtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaata 185  Q
    ||||||||||||||||||||||| || || ||||||||||||| ||||    
T  28421741 agtcaccttctgatcaggtacgaccagtgacgccgtctgtggggaata 28421788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 20899790 - 20899824
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgc 49  Q
    |||||||||||||||| ||||||||||||||||||    
T  20899790 ctctctgatctctactgacttgagcgtcggagtgc 20899824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 24095336 - 24095303
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtg 48  Q
    |||||||||||||||| |||||||||||||||||    
T  24095336 ctctctgatctctactgacttgagcgtcggagtg 24095303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 36712957 - 36712990
Alignment:
Q  132 accggtagtcaccttctgatcaggtacgatcaat 165  Q
    ||||| ||||||||||||||||||||||||||||    
T  36712957 accggcagtcaccttctgatcaggtacgatcaat 36712990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 38608179 - 38608130
Alignment:
Q  115 accaccgcattcaaa-gtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||||| ||| | ||||| ||||||||||||||||||||||||||    
T  38608179 accaccgcatttaaaagcaccggcagtcaccttctgatcaggtacgatca 38608130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 15620400 - 15620432
Alignment:
Q  22 atctctacttacttgagcgtcggagtgcttgca 54  Q
    |||||||||||||||||||||||||||| ||||    
T  15620400 atctctacttacttgagcgtcggagtgcctgca 15620432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 116 - 392
Target Start/End: Original strand, 16853301 - 16853582
Alignment:
Q  116 ccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatata--agctctccccgtttttatactcctaa 213  Q
    ||||||||||||||| ||||  |||||||| ||||||||||||||||| || ||||||||| ||||||||||  |||||||||||||||| |||||||||    
T  16853301 ccaccgcattcaaagcaccgacagtcacctcctgatcaggtacgatcagtgtcgccgtctgcgggaaatatataagctctccccgtttttgtactcctaa 16853400  T
Q  214 aagctaaagctttccaaaaaat---taccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatc 310  Q
    || | ||||||||||||||||    ||||||| ||||||||||||||   | | ||||||||| ||||||  |||| |||||| ||||||  ||| ||||    
T  16853401 aaaccaaagctttccaaaaaaaacataccatggctgccaacggtgccagctcccagatacgaattgagatatgcatccctcaacgggatggtatgacatc 16853500  T
Q  311 ttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtccccta 392  Q
     ||||||||||| |  ||||||| |||||||||||||||||| ||| |||| |||||| |||| |||||  |||||||||||    
T  16853501 ctcaccttcaccggtggacacacctagagaggaaccaacacagatagttccgctccaacaaagacctctgtagggtccccta 16853582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 103 - 388
Target Start/End: Complemental strand, 22006410 - 22006124
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttt 202  Q
    ||||||||||| ||||||||||| |||| ||||  ||||||||||||||||||||| |||| |||||||||||||||| | || ||| |||||||||||     
T  22006410 accaccactcaaaccaccgcatttaaagcaccgacagtcaccttctgatcaggtacaatcagtggcgccgtctgtggggagtacaagttctccccgtttc 22006311  T
Q  203 tatac-tcctaaaagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatga 301  Q
    ||  | | |||||| | ||||||||||||||| |||||||| |||| ||||||||| | |   || ||||||||||  |||| || |||||| | ||||     
T  22006310 tacccttgctaaaaaccaaagctttccaaaaagttaccatggctgcaaacggtgccaactcacagctacgaagtgaagttcgtatacctcaacgcgatgg 22006211  T
Q  302 catggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcc 388  Q
     ||| | ||||||||||| ||||  |  ||||  |||||||| || | ||||||| |||||||||||||||| ||||| ||||||||    
T  22006210 tatgacgtcttcaccttctcctgtgggtacacccagagaggagccgatacaaatagttcctctccaagaaagacctctgcagggtcc 22006124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 103 - 388
Target Start/End: Complemental strand, 22013927 - 22013641
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttt 202  Q
    ||||||||||| ||||||||||| |||| ||||  ||||||||||||||||||||| |||| |||||||||||||||| | || ||| |||||||||||     
T  22013927 accaccactcaaaccaccgcatttaaagcaccgacagtcaccttctgatcaggtacaatcagtggcgccgtctgtggggagtacaagttctccccgtttc 22013828  T
Q  203 tatac-tcctaaaagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatga 301  Q
    ||  | | |||||| | ||||||||||||||| |||||||| |||| ||||||||| | |   || ||||||||||  |||| || |||||| | ||||     
T  22013827 tacccttgctaaaaaccaaagctttccaaaaagttaccatggctgcaaacggtgccaactcacagctacgaagtgaagttcgtatacctcaacgcgatgg 22013728  T
Q  302 catggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcc 388  Q
     ||| | ||||||||||| ||||  |  ||||  |||||||| || | ||||||| |||||||||||||||| ||||| ||||||||    
T  22013727 tatgacgtcttcaccttctcctgtgggtacacccagagaggagccgatacaaatagttcctctccaagaaagacctctgcagggtcc 22013641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 22915057 - 22914912
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttcaccaccactcag 114  Q
    ||||||||||||||||||||||||||||||||||| |||| |||             |||| ||||||||||  ||||||||||||||||||||||| |     
T  22915057 ctctctgatctctacttacttgagcgtcggagtgcctgcaagtacacgcacccc---atccactccaagaagcattttggcgcatttcaccaccacttat 22914961  T
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||||| |||| ||||  ||||||||||||||||||||||||||    
T  22914960 accaccgcatttaaagcaccgacagtcaccttctgatcaggtacgatca 22914912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 1998020 - 1997866
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||||| |  |||||| ||||||||             |||||||||||  ||  |||||||| ||||||    
T  1998020 aaaccctcactctctctgatctctacttacttgagcattagagtgcctgcaggtacacacccc-----atccgctccaaatagcattttggcgtatttca 1997926  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||| |||||||||||||||  | ||| ||||||||||| ||||||||||||||    
T  1997925 ccaccactcaaaccaccgcattcaaaacatcggcagtcaccttctaatcaggtacgatca 1997866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 8733311 - 8733244
Alignment:
Q  96 gcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||| |||||||||| | |||||| |||||||||  |||| ||||||||||||||||||||||||||    
T  8733311 gcattccaccaccacttaaaccacctcattcaaagcgccggcagtcaccttctgatcaggtacgatca 8733244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 9085552 - 9085485
Alignment:
Q  96 gcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||| |||||||||| | |||||| |||||||||  |||| ||||||||||||||||||||||||||    
T  9085552 gcattccaccaccacttaaaccacctcattcaaagcgccggcagtcaccttctgatcaggtacgatca 9085485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 10848491 - 10848553
Alignment:
Q  141 caccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttt 203  Q
    |||||| || |||||||||||||  ||| |||||||||||||||| |||||||||||||||||    
T  10848491 caccttttgttcaggtacgatcagcggcaccgtctgtgggaaatacaagctctccccgttttt 10848553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 19773294 - 19773246
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  19773294 accaccacattcaaagcaccggcagtcaccttctgatcaggtacgatca 19773246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 3559402 - 3559459
Alignment:
Q  108 cactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||| ||||||||||| |||| ||||| | ||||||||||||||||||| ||||||    
T  3559402 cactcaaaccaccgcattaaaagcaccggcaatcaccttctgatcaggtacaatcaat 3559459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 16914623 - 16914563
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||| ||| ||| ||||||| |||| |||| |||||| ||||||||||||||||||||    
T  16914623 accaccattcaaacctccgcatttaaagcaccgatagtcaacttctgatcaggtacgatca 16914563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 29954620 - 29954680
Alignment:
Q  143 ccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttt 203  Q
    |||| |||||||||||||||| ||||||||||| || ||| || || || |||||||||||    
T  29954620 ccttatgatcaggtacgatcagtggcgccgtctatgagaattacaaactatccccgttttt 29954680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 30003774 - 30003834
Alignment:
Q  143 ccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttt 203  Q
    |||| |||||||||||||||| ||||||||||| || ||| || || || |||||||||||    
T  30003774 ccttatgatcaggtacgatcagtggcgccgtctatgagaattacaaactatccccgttttt 30003834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 115 - 388
Target Start/End: Original strand, 8991051 - 8991325
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaa--atataagctctccccgtttttatactccta 212  Q
    |||||||||||||||| |||||   ||||||||| |||||||||||| ||||||||| ||||||||||  |||||||||||||||||||||||| | |||    
T  8991051 accaccgcattcaaagcaccggcgatcaccttcttatcaggtacgattaatggcgccatctgtgggaaatatataagctctccccgtttttata-ttcta 8991149  T
Q  213 aaagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatctt 312  Q
    ||| | ||| |||||||||||||||||||| ||||||||| ||||   | | || ||||||||||||| ||||| ||||||  |||||  ||| |||| |    
T  8991150 aaaaccaaaactttccaaaaaattaccatggctgccaacgatgccagctcccaggtacgaagtgagatacgcatccctcaactggatggtatgacatcct 8991249  T
Q  313 caccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcc 388  Q
    ||||||||||||  | ||||  ||||||||||||| | |||||| ||||||||||  |||| ||||| ||||||||    
T  8991250 caccttcacctgtgggcacatctagagaggaaccagcccaaatagttcctctccagcaaagacctctgcagggtcc 8991325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 140 - 390
Target Start/End: Original strand, 24974202 - 24974455
Alignment:
Q  140 tcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccg----tttttatactcctaaaagctaaagctttccaaaaaat 235  Q
    ||||||||||||||| ||||| || ||||||||| || |||||||| ||||||||||||    ||||||||||||||||| | |||||||||||||||||    
T  24974202 tcaccttctgatcagatacgaccagtggcgccgtatgcgggaaataaaagctctccccgtttttttttatactcctaaaaaccaaagctttccaaaaaat 24974301  T
Q  236 taccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcacctggagacacacat 335  Q
    ||  ||| ||||||||| || | ||| | |||||||||| ||| | ||||| |||||| |||||| |||| |||| |||||||||||||  ||  |||      
T  24974302 taatatggctgccaacgatgtcaattcccagatacgaag-gaggtacgcatccctcaacgggatggcatgacatcctcaccttcacctgtggattcaccc 24974400  T
Q  336 agagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcccc 390  Q
    || ||||||||| || ||||| ||||||||||| ||||||||||  |||||||||    
T  24974401 agggaggaaccagcataaatagttcctctccaacaaaggcctctgtagggtcccc 24974455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 19967604 - 19967761
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||             |||||||||||||||   |||||| |||||||    
T  19967604 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcctgcaggtacaccccccc----atccgctccaagaagcactttggcacatttca 19967699  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||||| |||| ||| ||||||| |||||  |||||||||||||||||||||||||||    
T  19967700 ccaccactcaaaccatcgcgttcaaagcaccggcggtcaccttctgatcaggtacgatcaat 19967761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 21815831 - 21815924
Alignment:
Q  132 accggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttttatactcctaaaagctaaagctt 225  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||||    
T  21815831 accggcagtcaccttctgatcaggtacgatcagtggcgccgtctgtggaaaatataagctctccccgtttttatactcataaaaaccaaagctt 21815924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 38621754 - 38621663
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||||||||  || || ||||||  ||||||||||| |||||||||||||||| ||| | ||||||||||||||||||||| ||||    
T  38621754 atccgctccaagaagcattctgacgcattctaccaccactcaaaccaccgcattcaaagcaccagcagtcaccttctgatcaggtacaatca 38621663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 19442296 - 19442350
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  19442296 aaaccctcactctctctgatctctacttacttgagtgtcagagtgcctgcaggta 19442350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 9858971 - 9858931
Alignment:
Q  16 tctctgatctctacttacttgagcgtcggagtgcttgcagg 56  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  9858971 tctctgatctctacttacttgagcgtcggagtgcctgcagg 9858931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 30893931 - 30893872
Alignment:
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||| | ||| |||||||||||| ||||| |||||||||||||||| |||||||||    
T  30893931 ccaccacttaaaccgccgcattcaaagcaccggcagtcaccttctgatcaagtacgatca 30893872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 8996964 - 8997012
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||| ||||||||| ||| | ||||||||||||||||||||||||||    
T  8996964 accaccacattcaaagcaccagcagtcaccttctgatcaggtacgatca 8997012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 9263382 - 9263442
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||||| ||||||||||| |||  ||||  | ||||||||||||||||||||||||    
T  9263382 accaccactcaaaccaccgcatttaaaacaccgacaatcaccttctgatcaggtacgatca 9263442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 23933978 - 23934025
Alignment:
Q  138 agtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaata 185  Q
    |||||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  23933978 agtcaccttctgatcaggtatgatcagtggcgccgactgtggggaata 23934025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 9858919 - 9858829
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatc 162  Q
    |||||||| ||||||  || || ||||||  || |||| ||| |||||| |||| |||| ||||  |||||||||||||||||||||||||    
T  9858919 atccgctctaagaagcattctgacgcattctacaaccattcaaaccaccacatttaaagcaccgacagtcaccttctgatcaggtacgatc 9858829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22186168 - 22186223
Alignment:
Q  1 ctcaaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||||||  |||||||||| | |||||||||||||||||  ||||||||    
T  22186168 ctcaaaccctcactct--ctgatctctattgacttgagcgtcggagtgtctgcaggta 22186223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 24974080 - 24974121
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcagg 56  Q
    |||||||||||||||| ||||||||||| |||||| ||||||    
T  24974080 ctctctgatctctactgacttgagcgtcagagtgcctgcagg 24974121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 19442361 - 19442397
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccacc 108  Q
    |||||||||||||||  ||||||||||||||||||||    
T  19442361 atccgctccaagaagcattttggcgcatttcaccacc 19442397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 19442392 - 19442440
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||||||||||||| | ||| |||| |||||||||||| ||||||||    
T  19442392 accaccgcattcaaagcatcggcagtctccttctgatcagatacgatca 19442440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 103 - 377
Target Start/End: Complemental strand, 12236 - 11959
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtggg---aaatataagctctccccgt 199  Q
    |||| |||||| ||||||||||| |||| ||||| | ||| ||||| |||||||||||||| |||||| |||| ||||   |||||||||||||||||||    
T  12236 accatcactcaaaccaccgcatttaaagcaccggcaatcatcttctaatcaggtacgatcagtggcgctgtctatgggaaaaaatataagctctccccgt 12137  T
Q  200 ttttatactcctaaaagctaaagctttccaaaaaattaccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggat 299  Q
    |||||   | ||| || | |||| |||||||||| |||||||| || ||||| ||||| | | ||||||||||||||||||||  || |||||| | |||    
T  12136 ttttacctttctagaaaccaaagatttccaaaaatttaccatggcttccaacagtgccaactcctagatacgaagtgagattcatatccctcaacgtgat 12037  T
Q  300 gacatggcatcttcaccttcacctggagacacacatagagaggaaccaacacaaataattcctctccaagaaaggcct 377  Q
       ||| ||||||||||||| ||||| || |||| |||||||||||||  ||||||| |||||||| |||| ||||||    
T  12036 agtatgacatcttcaccttctcctggggatacacctagagaggaaccagtacaaatagttcctctctaagagaggcct 11959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 388
Target Start/End: Complemental strand, 74744 - 74492
Alignment:
Q  138 agtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatata--agctctccccgtttttatactcctaaaagctaaagctttccaaaaaat 235  Q
    ||||||||| |||| ||||||||||| |||| | ||||||||||||||||  |||||| |||||||||||| |||||||| | |||||||||||||||||    
T  74744 agtcaccttttgataaggtacgatcagtggcactgtctgtgggaaatatataagctcttcccgtttttatattcctaaaaaccaaagctttccaaaaaat 74645  T
Q  236 taccatgactgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcacctggagacacacat 335  Q
    ||||||| ||| ||| |||||    | | ||||||||| |||||| ||||| |||||| ||||||  ||| |||| ||| ||||||| |  | |||||      
T  74644 taccatggctggcaatggtgctagcttcgagatacgaaatgagatacgcatccctcaacgggatggtatgacatcctcagcttcacccgtgggcacactc 74545  T
Q  336 agagaggaaccaacacaaataattcctctccaagaaaggcctctacagggtcc 388  Q
    ||| |||||||| |||||||| ||||||||||  |||| ||||| ||||||||    
T  74544 agaaaggaaccagcacaaatagttcctctccagcaaagacctctgcagggtcc 74492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 68581 - 68533
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||| |||||||||| || |  ||||||||||||||||||||||||||    
T  68581 accactgcattcaaagcactgacagtcaccttctgatcaggtacgatca 68533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 47601 - 47758
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| || |||||             || ||||||||||||  |||||||||||||||    
T  47601 aaaccctcactctctctgatctctacttacttgagcgtcggaatgcctgtaggtacacacccccc---attcgctccaagaagcattttggcgcatttca 47697  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaa 164  Q
    |||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  47698 ccaccactcaaaccaccgcattcaaagcaccagcagtcaccttctgatcaggtacgatcaa 47758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 254
Target Start/End: Original strand, 37060 - 37210
Alignment:
Q  105 caccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgttttta 204  Q
    ||||||| | |||||||||||||||| ||||  |||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||  ||||||    
T  37060 caccacttaaaccaccgcattcaaagcaccgacagtcaccttctgatcaggtacgatcagtggtgccgtctgtgggaaatacaagctctaccaattttta 37159  T
Q  205 tactcctaaaagctaaagctttcc-aaaaaattaccatgactgccaacggt 254  Q
      || |||||| | |||||||||| |||||| |||||||||||||||||||    
T  37160 cgctactaaaaaccaaagctttccaaaaaaactaccatgactgccaacggt 37210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 49421 - 49463
Alignment:
Q  16 tctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||    
T  49421 tctctgatctctactgacttgagcgtctgagtgcctgcaggta 49463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 16978 - 16885
Alignment:
Q  132 accggtagtcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttttatactcctaaaagctaaagctt 225  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||||    
T  16978 accggcagtcaccttctgatcaggtacgatcagtggcgccgtctgtggaaaatataagctctccccgtttttatactcataaaaaccaaagctt 16885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 1707 - 1863
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttca 103  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||             |||||||||||| ||  |||||||||||||||    
T  1707 aaaccctcactctctctgatctctacttacttgaacgtcggagtgcctgcagatacacacccccc---atccgctccaagtagcattttggcgcatttca 1803  T
Q  104 ccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||| |||| |||||||||||||||| ||||| ||||||||||| |||||||| |||||    
T  1804 ccacccctcaaaccaccgcattcaaagcaccggcagtcaccttctcatcaggtatgatca 1863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 30307 - 30400
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||||||||||  ||||||||||||||||||||||| | | ||||  |||||||| ||||| | ||||||||| ||||||||||||||||    
T  30307 atccgctccaagaagcattttggcgcatttcaccaccactaaaatcaccttattcaaagcaccggcaatcaccttctaatcaggtacgatcaat 30400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 390
Target Start/End: Original strand, 11235 - 11381
Alignment:
Q  244 ctgccaacggtgcccattactagatacgaagtgagattcgcattcctcaaagggatgacatggcatcttcaccttcacctggagacacacatagagagga 343  Q
    |||||||||||| | ||| | |||||| |||||||||||| || |||||| |||||| | || |||  |||||||||| ||  ||  ||| ||| |||||    
T  11235 ctgccaacggtgtcaattcccagatacaaagtgagattcgtatccctcaacgggatggcgtgacatgctcaccttcacttgtggattcacctagggagga 11334  T
Q  344 accaacacaaataattcctctccaagaaaggcctctacagggtcccc 390  Q
    || |  ||||||| ||||||||||| |||||||||||||||||||||    
T  11335 actagtacaaatagttcctctccaacaaaggcctctacagggtcccc 11381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 11067 - 11109
Alignment:
Q  16 tctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  11067 tctctgatctctactgacttgagcgtcggagtgcctgcaggta 11109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 19160 - 19007
Alignment:
Q  8 cctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggtannnnnnnnnnnnnatccgctccaagaagtcttttggcgcatttcaccac 107  Q
    |||||||||||||||| ||||||||||||||||||  ||||  ||||||||             |||| ||||||||||  |||||| ||||||||||||    
T  19160 cctcactctctctgatatctacttacttgagcgtcatagtgtctgcaggta----catacccccatccactccaagaagcattttggtgcatttcaccac 19065  T
Q  108 cactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||| | | || ||||||||||| ||||  | ||||||||||||||||||||||||||    
T  19064 cactaaaatcatcgcattcaaagcaccgacaatcaccttctgatcaggtacgatcaat 19007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 56913 - 56973
Alignment:
Q  142 accttctgatcaggtacgatcaatggcgccgtctgtgggaaatataagctctccccgtttt 202  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  56913 accttctgatcatgtacgatcagtggcgccgtctgtgggaaatacaagctctccccatttt 56973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 1622 - 1569
Alignment:
Q  4 aaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  1622 aaaccctcactctc-ctgatctctacttacttgagcgtcggagtgcctgcaggta 1569  T

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Target: scaffold0058; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 15370 - 15336
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgc 49  Q
    |||||||||||||||||||||||||||||| ||||    
T  15370 ctctctgatctctacttacttgagcgtcggcgtgc 15336  T

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Target: scaffold0058; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 15285 - 15237
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||||| |||| |||   ||||||||||||||||||||||||||    
T  15285 accaccgcatttaaagcaccaacagtcaccttctgatcaggtacgatca 15237  T

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Target: scaffold0083 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 4445 - 4538
Alignment:
Q  72 atccgctccaagaagtcttttggcgcatttcaccaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    |||||||||||||||  || || || ||| |||||||||  | ||||||||||| |||| ||||  ||||||||||||||||||||||||||||    
T  4445 atccgctccaagaagcattctgacgtattccaccaccacataaaccaccgcatttaaagcaccgacagtcaccttctgatcaggtacgatcaat 4538  T

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Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 86642 - 86702
Alignment:
Q  103 accaccactcagaccaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    ||||||||||| ||||||||||| |||| ||||| ||| ||||||||||||||||||||||    
T  86642 accaccactcaaaccaccgcatttaaagcaccggcagtaaccttctgatcaggtacgatca 86702  T

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Target: scaffold0280 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 1239 - 1278
Alignment:
Q  19 ctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  1239 ctgatctctactgacttgagcgtcggagtgcctgcaggta 1278  T

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Target: scaffold0280; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 1332 - 1382
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatcaat 165  Q
    ||||||||||| |||| ||||  ||||||||||| ||||||||||||||||    
T  1332 accaccgcatttaaagcaccgacagtcaccttctaatcaggtacgatcaat 1382  T

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Target: scaffold0111 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 3024 - 3067
Alignment:
Q  15 ctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    |||||| ||||||||||||||||||||||||| || ||||||||    
T  3024 ctctctaatctctacttacttgagcgtcggagcgcctgcaggta 3067  T

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Target: scaffold0362 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7531 - 7586
Alignment:
Q  1 ctcaaaccctcactctctctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||||||||||| ||||  |||||||||| |||||||||||||||||| | ||||||    
T  7531 ctcaaaccctcaccctct--gatctctactaacttgagcgtcggagtgcctacaggta 7586  T

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Target: scaffold0362; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 7640 - 7688
Alignment:
Q  115 accaccgcattcaaagtaccggtagtcaccttctgatcaggtacgatca 163  Q
    |||||| |||||||   ||||||||||||||| ||||||||||||||||    
T  7640 accaccacattcaagacaccggtagtcaccttatgatcaggtacgatca 7688  T

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Target: scaffold0170 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 16595 - 16637
Alignment:
Q  102 caccaccactcagaccaccgcattcaaagtaccggtagtcacc 144  Q
    |||||||||||||||||||||||| |||| ||||| |||||||    
T  16595 caccaccactcagaccaccgcatttaaagcaccggcagtcacc 16637  T

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Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 24460 - 24493
Alignment:
Q  132 accggtagtcaccttctgatcaggtacgatcaat 165  Q
    ||||||||| ||||||||||||||||||||||||    
T  24460 accggtagtgaccttctgatcaggtacgatcaat 24493  T

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Target: scaffold0101 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 44495 - 44539
Alignment:
Q  140 tcaccttctgatcaggtacgatcaatggcgccgtctgtgggaaat 184  Q
    ||||||||| |||| ||||||||| || |||||||||||||||||    
T  44495 tcaccttctaatcaagtacgatcagtgacgccgtctgtgggaaat 44539  T

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Target: scaffold0091 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 952 - 912
Alignment:
Q  18 tctgatctctacttacttgagcgtcggagtgcttgcaggta 58  Q
    ||||| |||||||||||||||||||||||||  ||||||||    
T  952 tctgacctctacttacttgagcgtcggagtgtctgcaggta 912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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