View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_32 (Length: 325)
Name: NF11581_low_32
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 141 - 317
Target Start/End: Complemental strand, 34089260 - 34089084
Alignment:
| Q |
141 |
tttcaattcaaaggatccagaaatgtgccaatacaatacctgagttgttctactttgtttacctcttccggcttttgctctcttccttctctttctatgc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34089260 |
tttcaattcaaaggatccagaaatgtgccaatacaatacctgagttgttctactttgtttacctcttccggcttttgctctcttccttctctttctatgc |
34089161 |
T |
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| Q |
241 |
acaaaaaagcaaacggactgtgtgaaaatgagatgctacctaagcttctaatgattcatctgatcatcgtctctgct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34089160 |
acaaaaaagcaaacggactgtgtgaaaatgagatgctacctaagcttctaatgattcatctgatcatcgtctttgct |
34089084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 34089386 - 34089314
Alignment:
| Q |
19 |
gtctgacgctggagtcccaccctagtaaaggcgtcgtgtcaaaaaagatgagcatataatctctatcaatggg |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34089386 |
gtctgacgctggagtcccaccctagtaaaggcgtcgtgtcaaaaaagatgagcatataatctctatcaatggg |
34089314 |
T |
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