View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11581_low_35 (Length: 319)

Name: NF11581_low_35
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11581_low_35
NF11581_low_35
[»] chr3 (15 HSPs)
chr3 (18-203)||(9358748-9358932)
chr3 (66-194)||(47820896-47821026)
chr3 (67-197)||(28934741-28934868)
chr3 (67-203)||(31525363-31525496)
chr3 (73-196)||(28956951-28957074)
chr3 (141-203)||(52076136-52076198)
chr3 (143-198)||(10454357-10454412)
chr3 (61-197)||(20701139-20701275)
chr3 (142-203)||(43073045-43073106)
chr3 (141-198)||(44656229-44656286)
chr3 (67-190)||(53349401-53349523)
chr3 (67-127)||(55166896-55166955)
chr3 (142-198)||(8431422-8431478)
chr3 (67-127)||(8431491-8431549)
chr3 (67-127)||(43073120-43073178)
[»] chr1 (14 HSPs)
chr1 (28-166)||(43268640-43268778)
chr1 (56-203)||(19472786-19472933)
chr1 (67-203)||(12172954-12173087)
chr1 (58-195)||(8462976-8463113)
chr1 (67-203)||(26990601-26990734)
chr1 (35-196)||(43460664-43460831)
chr1 (143-203)||(38548750-38548810)
chr1 (67-194)||(42442015-42442142)
chr1 (153-203)||(28447802-28447852)
chr1 (74-127)||(47028937-47028990)
chr1 (144-203)||(31833965-31834024)
chr1 (142-189)||(46757378-46757425)
chr1 (142-195)||(26385035-26385087)
chr1 (66-127)||(41955963-41956024)
[»] chr8 (13 HSPs)
chr8 (19-203)||(30836127-30836320)
chr8 (220-289)||(31943953-31944022)
chr8 (67-203)||(22839250-22839387)
chr8 (73-197)||(38086419-38086544)
chr8 (142-198)||(40930834-40930890)
chr8 (74-198)||(5200486-5200609)
chr8 (67-198)||(24200626-24200753)
chr8 (142-194)||(25829272-25829324)
chr8 (142-198)||(13959223-13959279)
chr8 (150-198)||(584139-584187)
chr8 (67-132)||(10124859-10124925)
chr8 (168-198)||(7845138-7845168)
chr8 (142-191)||(44362940-44362989)
[»] chr4 (9 HSPs)
chr4 (43-197)||(16662312-16662464)
chr4 (73-198)||(32183282-32183409)
chr4 (73-198)||(16572074-16572198)
chr4 (61-203)||(25641268-25641413)
chr4 (142-203)||(15186980-15187041)
chr4 (144-203)||(47571570-47571629)
chr4 (141-203)||(42390771-42390833)
chr4 (163-197)||(45511407-45511441)
chr4 (68-120)||(42390855-42390906)
[»] chr7 (15 HSPs)
chr7 (67-198)||(30655602-30655734)
chr7 (67-203)||(46691844-46691981)
chr7 (56-193)||(49035862-49036001)
chr7 (73-198)||(31424776-31424902)
chr7 (74-196)||(41702870-41702992)
chr7 (142-198)||(1039067-1039123)
chr7 (68-194)||(33320704-33320825)
chr7 (142-197)||(36615808-36615863)
chr7 (141-198)||(42598057-42598114)
chr7 (148-194)||(32679023-32679069)
chr7 (142-195)||(19471096-19471149)
chr7 (142-195)||(22197744-22197797)
chr7 (142-195)||(22240024-22240077)
chr7 (67-127)||(22197668-22197727)
chr7 (67-127)||(22240094-22240153)
[»] chr5 (11 HSPs)
chr5 (56-194)||(23172981-23173118)
chr5 (67-195)||(10431056-10431185)
chr5 (143-196)||(22887284-22887337)
chr5 (67-197)||(819134-819261)
chr5 (152-203)||(9597753-9597804)
chr5 (143-194)||(9931804-9931855)
chr5 (144-196)||(25539896-25539947)
chr5 (142-197)||(3677795-3677849)
chr5 (67-128)||(2292161-2292223)
chr5 (61-126)||(9931877-9931941)
chr5 (147-198)||(42241593-42241644)
[»] chr2 (5 HSPs)
chr2 (66-198)||(41419616-41419748)
chr2 (66-199)||(14732343-14732474)
chr2 (67-189)||(41378216-41378332)
chr2 (73-198)||(22649069-22649194)
chr2 (144-198)||(38908743-38908797)
[»] chr6 (9 HSPs)
chr6 (73-203)||(15859100-15859234)
chr6 (67-195)||(10246910-10247035)
chr6 (67-198)||(11546765-11546895)
chr6 (67-194)||(34761160-34761287)
chr6 (142-203)||(6575797-6575858)
chr6 (141-195)||(33984833-33984887)
chr6 (67-203)||(33112714-33112851)
chr6 (152-198)||(14459932-14459978)
chr6 (61-127)||(33984747-33984813)
[»] scaffold0209 (1 HSPs)
scaffold0209 (150-198)||(12899-12947)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 9358932 - 9358748
Alignment:
Q  18 ctttcctggtgtttacagtgttacgtttataggcggcaccttggtttgtgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccg 117  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  9358932 ctttcctggtgtttacggtgttacgtttataggcggcatcttggtttgtgggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccg 9358833  T
Q  118 atttccccttctttgnnnnnnnnctccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    |||||||||||| ||        |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  9358832 atttccccttctatg-tttttttctccacccaagcttattagtacttctcgcacgggcttgttgggtaataatattttgccgattc 9358748  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 47820896 - 47821026
Alignment:
Q  66 tgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttg--nnnnnnnnctccacccgagcttattagtgct 163  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||     
T  47820896 tgggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttccccttctttgtatttttttcctccacccgagcttattagtgcg 47820995  T
Q  164 tctcgcacgggcttgttggttaataatattt 194  Q
    ||| |||||||||||||||||||||||||||    
T  47820996 tcttgcacgggcttgttggttaataatattt 47821026  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 28934868 - 28934741
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    ||||||||||| |||||||||||||| ||| |||||||||||  ||||||||||||||||| |||         ||||||||||||||||||||||||||    
T  28934868 gggtggttttttaaggggtttttgttcgagccggtgtttgtg--gcaaccgatttccccttgttt-tgttttttctccacccgagcttattagtgcttct 28934772  T
Q  167 cgcacgggcttgttggttaataatattttgc 197  Q
     ||||||||||||||||||||||||||||||    
T  28934771 tgcacgggcttgttggttaataatattttgc 28934741  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 31525363 - 31525496
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    ||||||||||||| |||||||||||| ||| || |||||||| |||||||||||||||||| ||||         ||||||| |||||||||||||||||    
T  31525363 gggtggtttttaa-ggggtttttgttcgagccgttgtttgtgtggcaaccgatttccccttgtttgttttttt--tccacccaagcttattagtgcttct 31525459  T
Q  167 cgcacgggcttgttggttaataatattttgcctattc 203  Q
     |||| |||||||||||||||||||||||||| ||||    
T  31525460 tgcacaggcttgttggttaataatattttgccgattc 31525496  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 28956951 - 28957074
Alignment:
Q  73 tttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttctcgcacg 172  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||           ||||||||||||| |||| |||| |||||    
T  28956951 tttttaaaggggtttttgttcgagccggtgtttgtgtggcaaccgatttccccttctttgtttttttttctcacccgagcttatcagtgtttcttgcacg 28957050  T
Q  173 ggcttgttggttaataatattttg 196  Q
    | ||||||||||||||||||||||    
T  28957051 gacttgttggttaataatattttg 28957074  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 52076136 - 52076198
Alignment:
Q  141 ctccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  52076136 ctccacccgagcttattagtgcttctcgcacgggcttgttggttagtaatattttgccgattc 52076198  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 10454357 - 10454412
Alignment:
Q  143 ccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  10454357 ccacccgagcttattagtgctccttgcacgggcttgttggttaataatattttgcc 10454412  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 20701139 - 20701275
Alignment:
Q  61 gtttgtgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnn-ctccacccgagcttattag 159  Q
    |||| |||||||||||| |||||||||||||| ||| ||  ||| ||| ||||| |||||||||||| ||||         || ||||||||||||||||    
T  20701139 gtttttgggtggttttttaaggggtttttgttcgagccgtagtt-gtgtggcaatcgatttccccttgtttgtatttttttcttcacccgagcttattag 20701237  T
Q  160 tgcttctcgcacgggcttgttggttaataatattttgc 197  Q
    ||||||| | ||||||| ||||||||||||||||||||    
T  20701238 tgcttcttgtacgggctcgttggttaataatattttgc 20701275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 43073106 - 43073045
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  43073106 tccacccaagcttattagtgcatcttgcacgggcttgttggttaataatattttgccgattc 43073045  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 44656286 - 44656229
Alignment:
Q  141 ctccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  44656286 ctccacccgagcttatttgtgcatcttgcacgggcttgttggttaataatattttgcc 44656229  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 53349401 - 53349523
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| ||||| | ||          |||||| || ||||||||||||||    
T  53349401 gggtggtttttaa-ggggtttttgtttgagccggtgtttgtgcggcaaccgattttcccttgtatgtttaattttcccacccaagtttattagtgcttct 53349499  T
Q  167 cgcacgggcttgttggttaataat 190  Q
     ||| | |||||||||||||||||    
T  53349500 tgcatgagcttgttggttaataat 53349523  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 55166955 - 55166896
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttcccctt 127  Q
    ||||||||||||| |||||||||||| ||| |   ||||||||||||||||||||||||||    
T  55166955 gggtggtttttaa-ggggtttttgttcgagccaaagtttgtgcggcaaccgatttcccctt 55166896  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 8431478 - 8431422
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    |||| |||||||| ||||||| ||| |||||||||| ||| | ||||||||||||||    
T  8431478 tccatccgagcttgttagtgcatcttgcacgggcttcttgatcaataatattttgcc 8431422  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 8431549 - 8431491
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttcccctt 127  Q
    ||||||||||||| |||||||||||| ||| |||||||| ||  |||||||||||||||||    
T  8431549 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgttgcaaccgatttcccctt 8431491  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 43073178 - 43073120
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttcccctt 127  Q
    ||||||||||||| |||||||||||| ||| |||||||| |  ||||||||||||||||||    
T  43073178 gggtggtttttaa-ggggtttttgttcgagccggtgttt-taaggcaaccgatttcccctt 43073120  T

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Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 43268778 - 43268640
Alignment:
Q  28 gtttacagtgttacgtttataggcggcaccttggtttgtgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttcccctt 127  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  43268778 gtttacagtgttacgtttatagacggcacctttgtttgtgggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttcccctt 43268679  T
Q  128 ctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    |||||        ||||||||||||||||||||| ||||    
T  43268678 ctttgttttttttctccacccgagcttattagtgtttct 43268640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 203
Target Start/End: Original strand, 19472786 - 19472933
Alignment:
Q  56 ccttggtttgtgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagctta 155  Q
    |||| |||| |||||||||||||||||| |||||||| ||| ||| ||||||  |||||| ||||||||||||||||        |||||||||||||||    
T  19472786 ccttagtttatgggtggtttttaaagggatttttgttcgagccggagtttgtatggcaactgatttccccttctttgtattttttctccacccgagctta 19472885  T
Q  156 ttagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  19472886 ttagtgcgtcttgcacgggcttgttggttaataatattttgccgattc 19472933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 12172954 - 12173087
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    ||||||||||||| |||||||||||| |||  | |||||||| |||||||||||||||||| ||||         ||||||| |||||||||||||||||    
T  12172954 gggtggtttttaa-ggggtttttgttcgagctgatgtttgtgtggcaaccgatttccccttgtttgttttttt--tccacccaagcttattagtgcttct 12173050  T
Q  167 cgcacgggcttgttggttaataatattttgcctattc 203  Q
     ||||||||||||||||||||||||||||||| ||||    
T  12173051 tgcacgggcttgttggttaataatattttgccgattc 12173087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 195
Target Start/End: Complemental strand, 8463113 - 8462976
Alignment:
Q  58 ttggtttgtgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttatt 157  Q
    ||||||| |||||||||||| |||||||||||||| ||| ||  |||| || |||||||||||| ||||| | ||        ||||||||||||| |||    
T  8463113 ttggtttttgggtggttttttaaggggtttttgttcgagccgacgtttttgtggcaaccgattttcccttgtatgtattttttctccacccgagctaatt 8463014  T
Q  158 agtgcttctcgcacgggcttgttggttaataatatttt 195  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  8463013 agtgcttcttgcacgagcttgttggttaataatatttt 8462976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 26990601 - 26990734
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    ||||||||||||| ||| |||||||| ||| ||||| ||||||||||| |||||| ||||| | ||         ||||||| |||||||||||||||||    
T  26990601 gggtggtttttaa-gggatttttgtttgagccggtgcttgtgcggcaatcgattttcccttgtatgttttttt--tccacccaagcttattagtgcttct 26990697  T
Q  167 cgcacgggcttgttggttaataatattttgcctattc 203  Q
     |||||||||| |||||||||||||||||||| ||||    
T  26990698 tgcacgggcttattggttaataatattttgccgattc 26990734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 43460664 - 43460831
Alignment:
Q  35 gtgttacgtttat-aggcggcaccttggtttgtgggtggtttttaaaggggtttttgttggagtcggtg-tttgtgcggcaaccgatttccccttctttg 132  Q
    ||||||||||| | |||||||||||| |||||  |||||||||| |||||||||||||| ||||| ||| |||||   |||||||||||||||||||| |    
T  43460664 gtgttacgttttttaggcggcacctttgtttgaaggtggtttttgaaggggtttttgttcgagtcagtgttttgtatcgcaaccgatttccccttcttag 43460763  T
Q  133 nnnnnnnnctc----cacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttg 196  Q
             ||    ||||  |||||||||||||||||||||| | ||||||||||||||||||||||    
T  43460764 ttttttttttcttttcaccttagcttattagtgcttctcgcacagacttgttggttaataatattttg 43460831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 38548750 - 38548810
Alignment:
Q  143 ccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||    
T  38548750 ccacccgagcttattagtgcgtcttgcacgggtttgttggttaataatattttgccgattc 38548810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 42442142 - 42442015
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctc-cacccgagcttattagtgcttc 165  Q
    ||||||||||||| |||||||||||| ||||||||||||    ||||||||||||||| || ||||         |  ||||||||||||||||||||||    
T  42442142 gggtggtttttaa-ggggtttttgttcgagtcggtgttttaatggcaaccgatttcccgttgtttgtattttttttttcacccgagcttattagtgcttc 42442044  T
Q  166 tcgcacgggcttgttggttaataatattt 194  Q
    | |||||| ||||||||||||||||||||    
T  42442043 ttgcacggacttgttggttaataatattt 42442015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 28447802 - 28447852
Alignment:
Q  153 ttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  28447802 ttattagtgcttcttgcacgggcttgttggttaataatattttgccgattc 28447852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 47028937 - 47028990
Alignment:
Q  74 ttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttcccctt 127  Q
    |||| |||||||||||||| ||| |||||||| |||||||||||||||||||||    
T  47028937 tttttaaggggtttttgttcgagccggtgtttttgcggcaaccgatttcccctt 47028990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 31833965 - 31834024
Alignment:
Q  144 cacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    ||||||||||| ||||||| ||| ||||||  ||||||||||||||||||||||| ||||    
T  31833965 cacccgagcttgttagtgcatcttgcacggatttgttggttaataatattttgccaattc 31834024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 46757378 - 46757425
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataa 189  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  46757378 tccacctgagcttattagtgcatcttgcacgggcttgttggttaataa 46757425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 26385035 - 26385087
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatatttt 195  Q
    ||||||| |||||||||| |||||| | |||||||||| |||||||||||||||    
T  26385035 tccacccaagcttattagcgcttcttg-acgggcttgtcggttaataatatttt 26385087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 41956024 - 41955963
Alignment:
Q  66 tgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttcccctt 127  Q
    |||||||||||| ||||| |||||||| ||| |||||||  |  ||||||||||||||||||    
T  41956024 tgggtggttttttaagggatttttgttcgagccggtgttattatggcaaccgatttcccctt 41955963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 30836320 - 30836127
Alignment:
Q  19 tttcctggtgtttacagtgttacgtttataggcggcaccttggtttgtgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccga 118  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||    
T  30836320 tttcctggtgtttacggtgttacgtttataggcggcacctttgtttgtgggtggtttttaaaggggtttttgttcgagccggtatttgtgcggcaatcga 30836221  T
Q  119 tttccccttc-----tttgnnnnnnnnctccacccgagctt----attagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    ||||||||||     |||         ||||| ||||||||    |||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  30836220 tttccccttctttttttttttttttttctccatccgagcttattaattagtgcttctcgcacgagcttgttggttaataatattttgccgattc 30836127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 31943953 - 31944022
Alignment:
Q  220 aataacaatacattgattctcccactgttcacttttagaaaatgatacaagtttcaacatgactatcagt 289  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31943953 aataacaatacattgattctcccattgttcacttttagaaaatgatacaagtttcaacatgactatcagt 31944022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 22839250 - 22839387
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttg-tgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttc 165  Q
    ||||||||||||||||| |||||||| ||| || |||||  |  |||||||||||||| ||||||||        ||||| |||| ||||||||||| ||    
T  22839250 gggtggtttttaaagggatttttgttcgagccgatgttttatatggcaaccgatttcctcttctttgtttttttcctccatccgaacttattagtgcgtc 22839349  T
Q  166 tcgcacgggcttgttggttaataatattttgcctattc 203  Q
    | ||||||||||||||||||||||||||||||| ||||    
T  22839350 ttgcacgggcttgttggttaataatattttgccgattc 22839387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 38086544 - 38086419
Alignment:
Q  73 tttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnn-ctccacccgagcttattagtgcttctcgcac 171  Q
    |||||||||||||||||||| ||| | | ||||||  |||||||||||| ||||||||||         |||||||||||||||||||||| ||| ||||    
T  38086544 tttttaaaggggtttttgttcgagccagagtttgtatggcaaccgattttcccttctttgtatttttttctccacccgagcttattagtgcgtcttgcac 38086445  T
Q  172 gggcttgttggttaataatattttgc 197  Q
    |||||| |||||||||||||||||||    
T  38086444 gggcttattggttaataatattttgc 38086419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 40930890 - 40930834
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40930890 tccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattttgcc 40930834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 5200609 - 5200486
Alignment:
Q  74 ttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttctcgcacgg 173  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||| ||||| | ||        |||||||| | |||||||||| |||| ||||||    
T  5200609 tttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgattttcccttgtatgttttttt-ctccacccaaacttattagtgtttcttgcacgg 5200511  T
Q  174 gcttgttggttaataatattttgcc 198  Q
     ||||||||||||||||||||||||    
T  5200510 acttgttggttaataatattttgcc 5200486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 198
Target Start/End: Complemental strand, 24200753 - 24200626
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    |||||||||||||  | ||||||||| ||| |||||||| ||||||||||||||||||||| | ||         ||||||| |||||||||||||||||    
T  24200753 gggtggtttttaa--gtgtttttgttcgagccggtgtttttgcggcaaccgatttccccttgtatgttttttt--tccacccaagcttattagtgcttct 24200658  T
Q  167 cgcacgggcttgttggttaataatattttgcc 198  Q
     |||||| ||||||| ||||||||||||||||    
T  24200657 tgcacggacttgttgattaataatattttgcc 24200626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 25829324 - 25829272
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattt 194  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25829324 tccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattt 25829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 13959279 - 13959223
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||    
T  13959279 tccacccgagcttattattgcttcttgcacgggcttgttggctaataatattttgcc 13959223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 584187 - 584139
Alignment:
Q  150 agcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||||    
T  584187 agcttattagtgcttcttgtacgggcttgttggctaataatattttgcc 584139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 10124859 - 10124925
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtg-tttgtgcggcaaccgatttccccttctttg 132  Q
    ||||||||||| |||||||||||||| ||| ||||| |||||  |||||||||||||||||| ||||    
T  10124859 gggtggttttttaaggggtttttgttcgagccggtgttttgttaggcaaccgatttccccttgtttg 10124925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 7845138 - 7845168
Alignment:
Q  168 gcacgggcttgttggttaataatattttgcc 198  Q
    |||||||||||||||||||||||||||||||    
T  7845138 gcacgggcttgttggttaataatattttgcc 7845168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 44362989 - 44362940
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataata 191  Q
    |||| |||| ||||||||||||||| |||| || ||||||||||||||||    
T  44362989 tccatccgaacttattagtgcttcttgcacaggattgttggttaataata 44362940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 16662464 - 16662312
Alignment:
Q  43 tttataggcggcaccttggtttgtgggtggtttttaaaggggtttttgttggagtcggtgttt-gtgcggcaaccgatttccccttctttgnnnnnnnnc 141  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||  ||| | |||||| ||  |||||| ||||| |||||||| |             
T  16662464 tttataggcggcacctttgtttgagggtggtttttaaaggggtttttgtacgagccagtgttttgtatggcaacagattttcccttcttagtttttt--- 16662368  T
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgc 197  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16662367 tccaccttagcttattagtgcttctcgcacgggcttgttggttaataatattttgc 16662312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 32183282 - 32183409
Alignment:
Q  73 tttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnc-tccacccgagcttattagtgcttctcgcac 171  Q
    |||||||||||||||||||| ||| ||||||||||  |||||||||||||||||||||||        | |||||||||||||||||||||  || ||||    
T  32183282 tttttaaaggggtttttgttcgagccggtgtttgtatggcaaccgatttccccttctttgttttttttcttccacccgagcttattagtgcgccttgcac 32183381  T
Q  172 gggcttg-ttggttaataatattttgcc 198  Q
    ||||||| ||||||||||||||||||||    
T  32183382 gggcttgtttggttaataatattttgcc 32183409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 16572074 - 16572198
Alignment:
Q  73 tttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttctcgcacg 172  Q
    |||||||||||||||| ||| ||  |||||||| ||||||||||||||||||||| | |          ||||||||||||||||||||| |||||||||    
T  16572074 tttttaaaggggtttt-gttcgaaccggtgtttttgcggcaaccgatttccccttgtatttattttttttccacccgagcttattagtgcatctcgcacg 16572172  T
Q  173 ggcttgttggttaataatattttgcc 198  Q
    ||||||||||||||||||||||||||    
T  16572173 ggcttgttggttaataatattttgcc 16572198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 25641413 - 25641268
Alignment:
Q  61 gtttgtgggtggttttt-aaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnn--ctccacccgagcttatt 157  Q
    |||| |||||||||||| ||| ||||||||||| ||| || |||| ||  ||||||| |||||||||||||||          |||||||| ||||| ||    
T  25641413 gtttatgggtggttttttaaaagggtttttgttcgagccgatgttagtatggcaaccaatttccccttctttgtattttttttctccacccaagcttttt 25641314  T
Q  158 agtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||    
T  25641313 agtgcttcttgcacgggcttgttggttaataacattttgccgattc 25641268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 15187041 - 15186980
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  15187041 tccacccaagcttattagtgcatcttgcacgggcttgttggttaataatattttgccgattc 15186980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 47571629 - 47571570
Alignment:
Q  144 cacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    |||||||||||||||||||| ||  |||||| ||||||||||||||||||||||| ||||    
T  47571629 cacccgagcttattagtgctccttccacgggtttgttggttaataatattttgccgattc 47571570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 42390833 - 42390771
Alignment:
Q  141 ctccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    |||||||||||||||||||| | ||| |||||||||||||||  ||||| |||| ||| ||||    
T  42390833 ctccacccgagcttattagtacgtcttgcacgggcttgttggaaaataaaatttagccgattc 42390771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 45511441 - 45511407
Alignment:
Q  163 ttctcgcacgggcttgttggttaataatattttgc 197  Q
    |||| ||||||||||||||||||||||||||||||    
T  45511441 ttcttgcacgggcttgttggttaataatattttgc 45511407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 42390906 - 42390855
Alignment:
Q  68 ggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatt 120  Q
    |||||||||||| |||||||||||| ||| ||||||||  |||||||||||||    
T  42390906 ggtggtttttaa-ggggtttttgtttgagccggtgttttagcggcaaccgatt 42390855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 198
Target Start/End: Complemental strand, 30655734 - 30655602
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgttt-gtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttc 165  Q
    ||||||||||| ||| |||||||||| |||||| | ||| ||| |||||||||||||||||| ||||         ||||||||||||||||||||| ||    
T  30655734 gggtggttttttaagaggtttttgttcgagtcgatattttgtgtggcaaccgatttccccttgtttgtattttttttccacccgagcttattagtgcgtc 30655635  T
Q  166 tcgcacgggcttgttggttaataatattttgcc 198  Q
    | |||||||||||||||||||||||||||||||    
T  30655634 ttgcacgggcttgttggttaataatattttgcc 30655602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 46691981 - 46691844
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnn--ctccacccgagcttattagtgctt 164  Q
    ||||||||||||| |||||||||||| ||| |||||||| || |||||||||||||||||| | ||          |||||||||||||| |||||||||    
T  46691981 gggtggtttttaa-ggggtttttgttcgagccggtgtttatgtggcaaccgatttccccttgtatgtattttttttctccacccgagcttgttagtgctt 46691883  T
Q  165 ctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    || ||||||||||||||||||||||||||||||| ||||    
T  46691882 cttgcacgggcttgttggttaataatattttgccgattc 46691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 193
Target Start/End: Complemental strand, 49036001 - 49035862
Alignment:
Q  56 ccttggtttgtgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnn--ctccacccgagct 153  Q
    |||| |||| |||||||||||| |||||||||||||| ||  |||||||| || |||||||||||||||||| ||||          |||||||||||||    
T  49036001 cctttgtttatgggtggttttttaaggggtttttgttcgaaccggtgtttatgtggcaaccgatttccccttgtttgtaatttttttctccacccgagct 49035902  T
Q  154 tattagtgcttctcgcacgggcttgttggttaataatatt 193  Q
    ||||||||||||| | |||| |||||||||||||||||||    
T  49035901 tattagtgcttcttgtacggacttgttggttaataatatt 49035862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 31424902 - 31424776
Alignment:
Q  73 tttttaaaggggtttttgttggagtcggtgttt-gtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttctcgcac 171  Q
    |||||||||||||||||| | ||| |||||||| |   |||||||||||||||||||||||        |||||||| |||||||||||| |||| ||||    
T  31424902 tttttaaaggggtttttgatcgagccggtgtttcgaatggcaaccgatttccccttctttgttttttttctccacccaagcttattagtgtttcttgcac 31424803  T
Q  172 gggcttgttggttaataatattttgcc 198  Q
    ||| |||||||||||||||||||||||    
T  31424802 gggtttgttggttaataatattttgcc 31424776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 41702870 - 41702992
Alignment:
Q  74 ttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttctcgcacgg 173  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||| |||||||| | ||        |||||||| | |||||||||||| || ||||||    
T  41702870 tttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgacttccccttgtatgttttttttctccacccaaacttattagtgctccttgcacgg 41702969  T
Q  174 gcttgttggttaataatattttg 196  Q
    ||| ||||||| |||||||||||    
T  41702970 gctagttggttgataatattttg 41702992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 1039123 - 1039067
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  1039123 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 1039067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 33320704 - 33320825
Alignment:
Q  68 ggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttctc 167  Q
    |||||||||| |||||| ||||||| ||| ||||||||||  ||||||| |||||||||| |||           ||||||||||||||||||||||||     
T  33320704 ggtggttttttaagggggttttgttcgagccggtgtttgtaaggcaaccaatttccccttgttttttttc-----ccacccgagcttattagtgcttctt 33320798  T
Q  168 gcacgggcttgttggttaataatattt 194  Q
    ||||||||||||||||||| |||||||    
T  33320799 gcacgggcttgttggttaacaatattt 33320825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 36615863 - 36615808
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgc 197  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  36615863 tccacccgagcttattagtgcttcttgcacgggcttgttgggtaataatattttgc 36615808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 42598057 - 42598114
Alignment:
Q  141 ctccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  42598057 ctccacccaagcttattagtgcttcttgcacgggtttgttggttaataatattttgcc 42598114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 32679023 - 32679069
Alignment:
Q  148 cgagcttattagtgcttctcgcacgggcttgttggttaataatattt 194  Q
    ||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  32679023 cgagcttattagtgcgtcttgcacgggcttgttggttaataaaattt 32679069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 19471149 - 19471096
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatatttt 195  Q
    |||||||||||||||||||||  || |||| ||||||||| |||||||||||||    
T  19471149 tccacccgagcttattagtgcaccttgcaccggcttgttgcttaataatatttt 19471096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 22197744 - 22197797
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatatttt 195  Q
    ||||||||||||| |||||||  || |||||| |||||||||||||||||||||    
T  22197744 tccacccgagctttttagtgcaccttgcacggacttgttggttaataatatttt 22197797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 22240077 - 22240024
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatatttt 195  Q
    ||||||||||||| |||||||  || |||||| |||||||||||||||||||||    
T  22240077 tccacccgagctttttagtgcaccttgcacggacttgttggttaataatatttt 22240024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 22197668 - 22197727
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttcccctt 127  Q
    ||||||||||| |||||||||||||| ||| |||||||| || || || ||||||||||||    
T  22197668 gggtggttttttaaggggtttttgttcgagacggtgttt-tgtggtaatcgatttcccctt 22197727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 22240153 - 22240094
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttcccctt 127  Q
    ||||||||||| |||||||||||||| ||| |||||||| || || || ||||||||||||    
T  22240153 gggtggttttttaaggggtttttgttcgagacggtgttt-tgtggtaatcgatttcccctt 22240094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 23173118 - 23172981
Alignment:
Q  56 ccttggtttgtgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagctta 155  Q
    |||| |||| |||||||||||||| |||||||| ||| ||| |||||||| |  |||||| |||||| |||| ||||         ||||||||||||||    
T  23173118 cctttgtttatgggtggtttttaagggggtttt-gttcgagccggtgtttatagggcaactgatttctccttgtttgtattttttttccacccgagctta 23173020  T
Q  156 ttagtgcttctcgcacgggcttgttggttaataatattt 194  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  23173019 ttagtgcttcttgcacgggcttgttggttaataatattt 23172981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 10431056 - 10431185
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttg-nnnnnnnnctccacccgagcttattagtgcttc 165  Q
    ||||||||||| | | |||||||||| ||||||||||||||| ||||||||||||| |||| ||||         |||||||||| ||||||| ||||||    
T  10431056 gggtggttttttatgaggtttttgttcgagtcggtgtttgtgtggcaaccgatttctccttgtttgtttttttttctccacccgaacttattaatgcttc 10431155  T
Q  166 tcgcacgggcttgttggttaataatatttt 195  Q
    | ||||||| |||||| |||||||||||||    
T  10431156 ttgcacgggtttgttgattaataatatttt 10431185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 22887284 - 22887337
Alignment:
Q  143 ccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttg 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22887284 ccacccgagcttattagtgcatctcgcacgggcttgttggttaataatattttg 22887337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 819261 - 819134
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    ||||||||||| |||||||||||||| |||| |||||||||  ||||||||||||||| || |||          ||||||||| |||||||||||||||    
T  819261 gggtggttttttaaggggtttttgttcgagttggtgtttgt--ggcaaccgatttccctttgttt-tattttttttccacccgaacttattagtgcttct 819165  T
Q  167 cgcacgggcttgttggttaataatattttgc 197  Q
      ||||| ||| |||| ||||||||||||||    
T  819164 tacacggacttattgggtaataatattttgc 819134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 9597804 - 9597753
Alignment:
Q  152 cttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  9597804 cttattagtgcttcttgcacaggcttgttggttaataatattttgccgattc 9597753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 9931855 - 9931804
Alignment:
Q  143 ccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattt 194  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||||    
T  9931855 ccacccaagcttgttagtgcttcttgcacgggcttgttggttaataatattt 9931804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 25539896 - 25539947
Alignment:
Q  144 cacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttg 196  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  25539896 cacccgagcttattaatgcttcttgcacgggcttgttgg-taataatattttg 25539947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 3677849 - 3677795
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgc 197  Q
    ||||||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||    
T  3677849 tccacccgagcttattagtgcatctcgcatgggcttgttgg-taataatatattgc 3677795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 2292161 - 2292223
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtg-tttgtgcggcaaccgatttccccttc 128  Q
    ||||||||||| |||||||||||||| ||| ||||| |||||  |||||||||||||||||||    
T  2292161 gggtggttttttaaggggtttttgttcgagccggtgttttgttaggcaaccgatttccccttc 2292223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 9931941 - 9931877
Alignment:
Q  61 gtttgtgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttcccct 126  Q
    |||| |||||||||||| | || ||||||||| |||  ||||||||||||||||||||||||||||    
T  9931941 gtttttgggtggtttttga-ggtgtttttgttcgagctggtgtttgtgcggcaaccgatttcccct 9931877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 42241644 - 42241593
Alignment:
Q  147 ccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    |||||||||||||||| ||| || ||| ||| ||||||||||||||||||||    
T  42241644 ccgagcttattagtgcatcttgcccggacttattggttaataatattttgcc 42241593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 41419616 - 41419748
Alignment:
Q  66 tgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttct-ttgnnnnnnnnctccacccgagcttattagtgctt 164  Q
    |||||||||||||| |||||||||||| |||||||||||  |  |||||||||||||||||| | ||          ||||||||||||||||||||| |    
T  41419616 tgggtggtttttaa-ggggtttttgttcgagtcggtgttattatggcaaccgatttccccttgtatttgtttttttttccacccgagcttattagtgcat 41419714  T
Q  165 ctcgcacgggcttgttggttaataatattttgcc 198  Q
    || |||||||||||||||||||||||||||||||    
T  41419715 cttgcacgggcttgttggttaataatattttgcc 41419748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 14732474 - 14732343
Alignment:
Q  66 tgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttc 165  Q
    |||||||||||||| |||||||||||| |||  ||| ||| ||||| ||||||||||||||| | |         | ||||||||||||||||||||  |    
T  14732474 tgggtggtttttaa-ggggtttttgttcgagctggtatttttgcggtaaccgatttccccttgtattatttttttc-ccacccgagcttattagtgcacc 14732377  T
Q  166 tcgcacgggcttgttggttaataatattttgcct 199  Q
    ||||||||||||||||||||||||||||||||||    
T  14732376 tcgcacgggcttgttggttaataatattttgcct 14732343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 41378332 - 41378216
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    ||||||||||||||||||||||| || ||| ||| ||||||| |||||||||||||||   |||||         ||||||||||||||||||||| |||    
T  41378332 gggtggtttttaaaggggtttttattcgagccggagtttgtgtggcaaccgatttccc---ctttgtatttt---tccacccgagcttattagtgcatct 41378239  T
Q  167 cgcacgggcttgttggttaataa 189  Q
      |||||||||||||||||||||    
T  41378238 ttcacgggcttgttggttaataa 41378216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 22649194 - 22649069
Alignment:
Q  73 tttttaaaggggtttttgttggagtcggtgtttgtgc-ggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttctcgcac 171  Q
    |||||||||||||||||| |  || |||||||||    |||||||||||||||||||||||        ||| |||| ||||||||||| ||||| ||||    
T  22649194 tttttaaaggggtttttgatcaagccggtgtttggaatggcaaccgatttccccttctttgttttttt-ctctacccaagcttattagtacttcttgcac 22649096  T
Q  172 gggcttgttggttaataatattttgcc 198  Q
    |||||||||||||||||| ||||||||    
T  22649095 gggcttgttggttaataaaattttgcc 22649069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 38908743 - 38908797
Alignment:
Q  144 cacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    ||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||    
T  38908743 cacccgagcttattagtgcatcttgcacggccttattggttaataatattttgcc 38908797  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 15859100 - 15859234
Alignment:
Q  73 tttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttg--nnnnnnnnctccacccgagcttattagtgcttctcgca 170  Q
    |||||||||||||||||||| ||| ||||||||||  |||||||||||||||||||||||          ||||||||||||||||||||||  || |||    
T  15859100 tttttaaaggggtttttgttcgagccggtgtttgtttggcaaccgatttccccttctttgttttttttttctccacccgagcttattagtgcgccttgca 15859199  T
Q  171 cgggcttg--ttggttaataatattttgcctattc 203  Q
    ||||||||  ||| |||||||||||||||| ||||    
T  15859200 cgggcttgttttgattaataatattttgccgattc 15859234  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 10246910 - 10247035
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    |||||||||||||||||||||||||| ||| ||||| ||||| | |||||||||| ||||||||||        ||||||| || | | |||||||||||    
T  10246910 gggtggtttttaaaggggtttttgttcgagccggtg-ttgtgtgacaaccgattttcccttctttg--ttttttctccacctgaaccttttagtgcttct 10247006  T
Q  167 cgcacgggcttgttggttaataatatttt 195  Q
     ||||||||||||||||||||||||||||    
T  10247007 tgcacgggcttgttggttaataatatttt 10247035  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 11546765 - 11546895
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    |||| |||||| |||| ||||||||| ||| ||||||||||  | ||||||||||| |||||||||        ||| ||||||||||||||||||| ||    
T  11546765 gggtagttttttaaggagtttttgttcgagccggtgtttgtatgacaaccgatttctccttctttgttttttttctc-acccgagcttattagtgctact 11546863  T
Q  167 cgcacgggcttgttggttaataatattttgcc 198  Q
     ||||||||||||  |||||||||||||||||    
T  11546864 tgcacgggcttgtcagttaataatattttgcc 11546895  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 34761160 - 34761287
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnctccacccgagcttattagtgcttct 166  Q
    ||||||||||| |||| ||||||||| ||||||||||||||  | |||||||||||  ||||||||          ||||||||||||||||||||| ||    
T  34761160 gggtggttttttaaggagtttttgttcgagtcggtgtttgtatgacaaccgatttcttcttctttgtatttttttcccacccgagcttattagtgctact 34761259  T
Q  167 cgcacgggcttgttggttaataatattt 194  Q
     |||||||||||| | ||||||||||||    
T  34761260 tgcacgggcttgtcgtttaataatattt 34761287  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 6575797 - 6575858
Alignment:
Q  142 tccacccgagcttattagtgcttctcgcacgggcttgttggttaataatattttgcctattc 203  Q
    ||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  6575797 tccacccgaacttattagtgcttcttgcacgggcttgttgattaataatattttgccgattc 6575858  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 33984833 - 33984887
Alignment:
Q  141 ctccacccgagcttattagtgcttctcgcacgggcttgttggttaataatatttt 195  Q
    ||||||||||||||||||||||| |||  ||||||||||||| ||||||||||||    
T  33984833 ctccacccgagcttattagtgctcctcatacgggcttgttggctaataatatttt 33984887  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 33112851 - 33112714
Alignment:
Q  67 gggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttccccttctttgnnnnnnnnct-ccacccgagcttattagtgcttc 165  Q
    ||||||||||| |||||||||||||| ||| |   ||||||  ||||||||||||||||||  |||         | || ||| ||||| ||||||| ||    
T  33112851 gggtggttttttaaggggtttttgttcgagccaaagtttgtatggcaaccgatttccccttgcttgttttttttttcccccccaagctttttagtgcgtc 33112752  T
Q  166 tcgcacgggcttgttggttaataatattttgcctattc 203  Q
    | ||||||||||||||||||||||||||||||| ||||    
T  33112751 ttgcacgggcttgttggttaataatattttgccgattc 33112714  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 14459932 - 14459978
Alignment:
Q  152 cttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||||    
T  14459932 cttattagtgctcctcgcacgggctcgttggctaataatattttgcc 14459978  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 33984747 - 33984813
Alignment:
Q  61 gtttgtgggtggtttttaaaggggtttttgttggagtcggtgtttgtgcggcaaccgatttcccctt 127  Q
    |||| |||||||||||| |||||||||||||| ||  | ||||||||  ||||||||||||||||||    
T  33984747 gtttatgggtggtttttgaaggggtttttgttcgaaccagtgtttgtatggcaaccgatttcccctt 33984813  T

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Target: scaffold0209 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 12947 - 12899
Alignment:
Q  150 agcttattagtgcttctcgcacgggcttgttggttaataatattttgcc 198  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||||    
T  12947 agcttattagtgcttcttgtacgggcttgttggctaataatattttgcc 12899  T

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