View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11581_low_40 (Length: 296)
Name: NF11581_low_40
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 44801736 - 44801453
Alignment:
| Q |
1 |
cataccaagcttcatcacaactcatgtaggttttaggaagaaagaaaatctagcgtcaaggaaatgtctacggctataagttgattagaatatgaactag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44801736 |
cataccaagcttcatcacaactcatgtaggttttaggaagaaagaaaatctagtgtcaaggaaatgtctacggctataagttgattag---atgaactag |
44801640 |
T |
|
| Q |
101 |
tgaaccggacaaactaaaccaatctaatatgtaaaatacaacgagcactatgcaaatagnnnnnnnaattaaattgtagtaaaatttatgtcttacatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44801639 |
tgaaccggacaaactaaaccaatctaatatgtaaaatacaacgagcactatgcaaatagtttttttaattaaattgtagtaaaatttatgtcttacatat |
44801540 |
T |
|
| Q |
201 |
gtgatggtnnnnnnnngtccactttcacacggtccctttcataagaaaccatctctctcaaacacttagaaaccctaactttcatct |
287 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44801539 |
gtgatggtaaaaaaaagtccactttcacacggtccctttcataagaaaccatctctctcaaacacttagaaaccctaactttcatct |
44801453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University